Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 123 5e-23 seq1 95.1 2e-14 >seq2 Length=21544594 Score = 123 bits (136), Expect = 5e-23 Identities = 293/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 |||||||| || || || || |||||||| || || ||||| |||||||||||| | Sbjct 8575462 GCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTT 8575403 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | ||||||| | |||| |||||| ||| | || ||| | ||||| Sbjct 8575402 AAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGAG 8575343 Query 102041 GGTCTTCATCGCGACTTTG-CATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATC 102099 || | || ||||||||| | ||| || |||| | | | || | |||| | | Sbjct 8575342 GGCTTGCACTGCGACTTTGCCGTGC-TGATGTTCCAGCA-CCTGGTGCAGCGACCCAAGC 8575285 Query 102100 AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCAC 102159 | || | || | || || || || || || ||||| || || || ||||| Sbjct 8575284 --GCGAGCGCATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTCAC 8575227 Query 102160 AGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGA 102219 | | ||||||| || || || | || ||||||||| | ||||| |||||||||||| Sbjct 8575226 CGATGCCCTGCCCGTCAATTTGATCGGCATGAACTGCGACCTGATGTCCCAGTACATTGA 8575167 Query 102220 ATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAA 102279 || || || || | | || || |||| | | |||| ||| || | || Sbjct 8575166 GTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAAAA 8575107 Query 102280 CCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAG 102339 ||| || |||||||| | || || || || |||||||||||||| ||||||| Sbjct 8575106 CCCATTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTCGAAAAGAA 8575047 Query 102340 AGTCGCCGAGTATCAACG 102357 || || ||||| || || Sbjct 8575046 GGTGGCGGAGTACCAGCG 8575029 >seq1 Length=23539531 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 93570 GTTCACCACTTGGAATGATCCTGAAAGTACATTACGATTATACATGTTGGACGTTAAAGG 93629 ||| ||||| |||||| || || || || || | || ||||| | || | || Sbjct 10003744 GTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGG 10003803 Query 93630 CTCAAAGGATTCAGAGTTGCCCAGGATCTGTGCAGTGGATGCAGTAGGCATGGGAGCAAC 93689 ||| ||||||||| |||||||| ||||| || || |||||||| |||||||||||||| Sbjct 10003804 CTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAAC 10003863 Query 93690 AAACATTGAATTGTGAACACCATACTTCATAATGTCCCTTCTCAATTGCTCCCAATC 93746 | || ||| || | ||||| | |||| ||||| | |||||| || ||| || Sbjct 10003864 GAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTC 10003920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989487398356145