Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 291 1e-73 >seq1 Length=23539531 Score = 291 bits (322), Expect = 1e-73 Identities = 1208/1888 (64%), Gaps = 36/1888 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| |||||| || || || || || ||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA---AACTCGCTTAAT 62272 |||||| || | | ||| || |||||||| | || || || | ||||| Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630 Query 62273 ATCTTCTGG---AAGGTTT--GTATTCTGAATGGATCCACCATCTACCATA--ATCCTAT 62325 | ||||||| | ||| | | || ||||| ||||| || || | ||| ||| | Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCT-CGATATGATCTGGT 10003688 Query 62326 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385 |||| || || || | ||| || | ||||||| | | | | ||| |||| | Sbjct 10003689 TCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10003748 Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445 | || |||||||| || |||| |||| ||| ||||| || || |||| ||||| || | Sbjct 10003749 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGA 10003808 Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505 || ||||| || |||| || ||||| || |||||||| ||||| || || || | | Sbjct 10003809 AGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCA 10003868 Query 62506 AACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGATGTTCCCAATTCCAAAGA 62564 || | | ||||| |||| | | | || || | | | ||| | ||| || Sbjct 10003869 GTGAGTTCCGGACACCGT-GCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10003927 Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACT-GGCGTACGATCC 62623 | || || || || || | ||| || || || || | || Sbjct 10003928 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 10003987 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | | || || || ||||| ||||| ||| || |||| || || || || || || || Sbjct 10003988 T-CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCC 10004046 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATT-TAGATCTTGTGCTTCCGGGCTATCAAATG 62742 || ||||| |||||||| |||| || ||| ||| | ||||| ||| || | | Sbjct 10004047 ATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACG 10004105 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10004106 GGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGAT 10004165 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 | ||| ||| || | || ||||| | ||||||||||| ||||| || || || | Sbjct 10004166 GCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGT 10004225 Query 62863 TGAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62921 | |||||| || || || ||||| || ||||| || || |||||| | || | Sbjct 10004226 TTAGATTTTTGGTAACTATCTTTG-TGACTTCCTTGAGCTTCTTGAAATCATA-CG-TCT 10004282 Query 62922 TCT-----ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT 62976 ||| | || |||||||| | || | || |||| || || || || | ||||| Sbjct 10004283 TCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCAT 10004342 Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036 | | ||||| | || || ||||| | || || ||||| || || |||| || Sbjct 10004343 CCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACAT 10004402 Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096 | || || || ||||| |||| || || ||||| | || ||| | ||| | || || | Sbjct 10004403 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCT 10004462 Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63156 | | || | || || || || ||| | | | ||||||| | | ||| | Sbjct 10004463 CCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCC 10004522 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| |||||| |||| |||||| || || ||||| || | || | Sbjct 10004523 GACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGA 10004582 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 | ||||| | | || ||||| | |||||| || |||| ||| ||| ||||||| Sbjct 10004583 GACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCA 10004642 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 | |||||||| || ||||| || || ||| ||||| | || | || || || || | Sbjct 10004643 TGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGC 10004702 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | || ||||| || || || |||||| | | | ||| || ||||| ||||||| || | Sbjct 10004703 CCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAA 10004762 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 |||| | | || || || ||| ||||||||||| | || | ||| |||||| Sbjct 10004763 TGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAA 10004822 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || |||| ||| |||| | || || || ||||||| || ||| | || || | Sbjct 10004823 AGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGC 10004882 Query 63517 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 | | |||||||| | | | ||| || || || || || || || ||||| | Sbjct 10004883 CCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 |||||| ||| | | | | ||||| || ||| || | ||||| | || || Sbjct 10004941 GGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAG 10005000 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 ||||| |||| || | || | || | || ||| | || || || || || Sbjct 10005001 GAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG 10005060 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || || | || || || ||||| || || || | |||| || |||||| | Sbjct 10005061 TGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCC 10005120 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 ||| ||||| | || || ||||| | ||| ||||| |||| || | || || ||| Sbjct 10005121 ATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTT 10005180 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 | | || | || ||||| |||| || || || ||||||||||| || |||||| Sbjct 10005181 TCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGC 63902 || || || || || ||| || ||| Sbjct 10005241 ACGATCATAGATTATGGACGAGTTTAGC 10005268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629757617746320