Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 291 1e-73
>seq1
Length=23539531
Score = 291 bits (322), Expect = 1e-73
Identities = 1208/1888 (64%), Gaps = 36/1888 (2%)
Strand=Plus/Plus
Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155
||||| ||||| |||| |||||| || || || || || ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATA---AACTCGCTTAAT 62272
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 62273 ATCTTCTGG---AAGGTTT--GTATTCTGAATGGATCCACCATCTACCATA--ATCCTAT 62325
| ||||||| | ||| | | || ||||| ||||| || || | ||| ||| |
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCT-CGATATGATCTGGT 10003688
Query 62326 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAA 62385
|||| || || || | ||| || | ||||||| | | | | ||| |||| |
Sbjct 10003689 TCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10003748
Query 62386 CTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 62445
| || |||||||| || |||| |||| ||| ||||| || || |||| ||||| || |
Sbjct 10003749 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGA 10003808
Query 62446 CCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 62505
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | |
Sbjct 10003809 AGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCA 10003868
Query 62506 AACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGATGTTCCCAATTCCAAAGA 62564
|| | | ||||| |||| | | | || || | | | ||| | ||| ||
Sbjct 10003869 GTGAGTTCCGGACACCGT-GCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10003927
Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACT-GGCGTACGATCC 62623
| || || || || || | ||| || || || || | ||
Sbjct 10003928 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 10003987
Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683
| | || || || ||||| ||||| ||| || |||| || || || || || || ||
Sbjct 10003988 T-CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCC 10004046
Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATT-TAGATCTTGTGCTTCCGGGCTATCAAATG 62742
|| ||||| |||||||| |||| || ||| ||| | ||||| ||| || | |
Sbjct 10004047 ATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACG 10004105
Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802
| || | |||||| || || || || ||||| |||| |||||| || | || | ||
Sbjct 10004106 GGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGAT 10004165
Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862
| ||| ||| || | || ||||| | ||||||||||| ||||| || || || |
Sbjct 10004166 GCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGT 10004225
Query 62863 TGAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62921
| |||||| || || || ||||| || ||||| || || |||||| | || |
Sbjct 10004226 TTAGATTTTTGGTAACTATCTTTG-TGACTTCCTTGAGCTTCTTGAAATCATA-CG-TCT 10004282
Query 62922 TCT-----ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT 62976
||| | || |||||||| | || | || |||| || || || || | |||||
Sbjct 10004283 TCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCAT 10004342
Query 62977 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 63036
| | ||||| | || || ||||| | || || ||||| || || |||| ||
Sbjct 10004343 CCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACAT 10004402
Query 63037 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63096
| || || || ||||| |||| || || ||||| | || ||| | ||| | || || |
Sbjct 10004403 TCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCT 10004462
Query 63097 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63156
| | || | || || || || ||| | | | ||||||| | | ||| |
Sbjct 10004463 CCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGGCCC 10004522
Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216
| ||| |||||| |||| |||||| || || ||||| || | || |
Sbjct 10004523 GACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGA 10004582
Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276
| ||||| | | || ||||| | |||||| || |||| ||| ||| |||||||
Sbjct 10004583 GACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCA 10004642
Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336
| |||||||| || ||||| || || ||| ||||| | || | || || || || |
Sbjct 10004643 TGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGC 10004702
Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396
| || ||||| || || || |||||| | | | ||| || ||||| ||||||| || |
Sbjct 10004703 CCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAA 10004762
Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456
|||| | | || || || ||| ||||||||||| | || | ||| ||||||
Sbjct 10004763 TGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAA 10004822
Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516
| || |||| ||| |||| | || || || ||||||| || ||| | || || |
Sbjct 10004823 AGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGC 10004882
Query 63517 CACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574
| | |||||||| | | | ||| || || || || || || || ||||| |
Sbjct 10004883 CCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940
Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634
|||||| ||| | | | | ||||| || ||| || | ||||| | || ||
Sbjct 10004941 GGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAAG 10005000
Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694
||||| |||| || | || | || | || ||| | || || || || ||
Sbjct 10005001 GAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCATG 10005060
Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754
|| || | || || || ||||| || || || | |||| || |||||| |
Sbjct 10005061 TGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTCC 10005120
Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814
||| ||||| | || || ||||| | ||| ||||| |||| || | || || |||
Sbjct 10005121 ATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTT 10005180
Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874
| | || | || ||||| |||| || || || ||||||||||| || ||||||
Sbjct 10005181 TCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGTC 10005240
Query 63875 TCGTTCGTAAATAATAACCGAATTGAGC 63902
|| || || || || ||| || |||
Sbjct 10005241 ACGATCATAGATTATGGACGAGTTTAGC 10005268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629757617746320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |