Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 5e-26
>seq1
Length=23539531
Score = 132 bits (146), Expect = 5e-26
Identities = 515/805 (64%), Gaps = 7/805 (1%)
Strand=Plus/Plus
Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882
|| || | || ||| |||||||| ||||| || || | |||| |||||| || ||
Sbjct 10003433 TTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATG 10003492
Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942
||||| ||| | || | || | | | || ||| | | || ||||| ||||||
Sbjct 10003493 GAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCT 10003552
Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002
|| |||||||| | ||||| ||||||| | | | || || || ||||| |||
Sbjct 10003553 ATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACC 10003612
Query 37003 GTTTTATATATTTGTTTTATATTATCTGGTAAA-TCTAAATGTT--GAATAGAACCATTA 37059
|| || || | | | | || | |||| ||| |||||| |||| || || |
Sbjct 10003613 GTCTTGTACAGATCTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTG 10003672
Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTC 37117
| | || ||||| ||||| | | ||||| | | | || |||| || |
Sbjct 10003673 CTCGATATGATCTGGTTCTTCATGTCGTCGTCCCACAAGT--CCAGTTCGGTTAGGTCGC 10003730
Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATAT 37177
||| | || | || || ||||| || || || || | |||| | || ||||| |
Sbjct 10003731 GCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGT 10003790
Query 37178 TGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAG 37237
| | || || || || | ||| ||||| || | | ||| |||| |||||||||||| |
Sbjct 10003791 TCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGG 10003850
Query 37238 GCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTT 37297
|||| || || | || || || | | || || | ||||| || || | ||
Sbjct 10003851 GCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATT 10003910
Query 37298 CATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTT 37357
| ||| ||||| | | ||||| ||| |||||| || || || | ||| ||||
Sbjct 10003911 TCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTT 10003970
Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC 37417
| ||| | || | | || || || || || || | | | || |||||||| |
Sbjct 10003971 TGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGC 10004030
Query 37418 TAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477
| | ||| | ||| |||| || || ||||| || || || ||| || | ||||
Sbjct 10004031 TGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTT 10004090
Query 37478 CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGA 37537
||||||| ||| | | | | || | || || ||||||| || ||||||| ||| |
Sbjct 10004091 CTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAA 10004150
Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597
| || | ||| | ||| || ||| || | | ||| || |||||||||||||
Sbjct 10004151 TGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGA 10004210
Query 37598 TATCTATTATTTTATTTAGATTTTT 37622
|||| ||||| || |||||||||||
Sbjct 10004211 TATCAATTATCTTGTTTAGATTTTT 10004235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468480178869360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |