Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 >seq1 Length=23539531 Score = 132 bits (146), Expect = 5e-26 Identities = 515/805 (64%), Gaps = 7/805 (1%) Strand=Plus/Plus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 || || | || ||| |||||||| ||||| || || | |||| |||||| || || Sbjct 10003433 TTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATG 10003492 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCT 36942 ||||| ||| | || | || | | | || ||| | | || ||||| |||||| Sbjct 10003493 GAAGTCAGCTTTCCATAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCT 10003552 Query 36943 ATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACC 37002 || |||||||| | ||||| ||||||| | | | || || || ||||| ||| Sbjct 10003553 ATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACC 10003612 Query 37003 GTTTTATATATTTGTTTTATATTATCTGGTAAA-TCTAAATGTT--GAATAGAACCATTA 37059 || || || | | | | || | |||| ||| |||||| |||| || || | Sbjct 10003613 GTCTTGTACAGATCTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTG 10003672 Query 37060 TGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTA--TTAGTTCTC 37117 | | || ||||| ||||| | | ||||| | | | || |||| || | Sbjct 10003673 CTCGATATGATCTGGTTCTTCATGTCGTCGTCCCACAAGT--CCAGTTCGGTTAGGTCGC 10003730 Query 37118 TCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATAT 37177 ||| | || | || || ||||| || || || || | |||| | || ||||| | Sbjct 10003731 GCAACAAATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGT 10003790 Query 37178 TGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAG 37237 | | || || || || | ||| ||||| || | | ||| |||| |||||||||||| | Sbjct 10003791 TCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGG 10003850 Query 37238 GCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTT 37297 |||| || || | || || || | | || || | ||||| || || | || Sbjct 10003851 GCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATT 10003910 Query 37298 CATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTT 37357 | ||| ||||| | | ||||| ||| |||||| || || || | ||| |||| Sbjct 10003911 TCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTT 10003970 Query 37358 TACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAAC 37417 | ||| | || | | || || || || || || | | | || |||||||| | Sbjct 10003971 TGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGC 10004030 Query 37418 TAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTT 37477 | | ||| | ||| |||| || || ||||| || || || ||| || | |||| Sbjct 10004031 TGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTT 10004090 Query 37478 CTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGA 37537 ||||||| ||| | | | | || | || || ||||||| || ||||||| ||| | Sbjct 10004091 CTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAA 10004150 Query 37538 TACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGA 37597 | || | ||| | ||| || ||| || | | ||| || ||||||||||||| Sbjct 10004151 TGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGA 10004210 Query 37598 TATCTATTATTTTATTTAGATTTTT 37622 |||| ||||| || ||||||||||| Sbjct 10004211 TATCAATTATCTTGTTTAGATTTTT 10004235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468480178869360