Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1 315 9e-81
>seq1
Length=23539531
Score = 315 bits (348), Expect = 9e-81
Identities = 1213/1888 (64%), Gaps = 38/1888 (2%)
Strand=Plus/Plus
Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948
||||| ||||| |||| |||||| || || || || || ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 65065
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 65066 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCT-GCCATAATCCTATT 65119
| ||||||| | ||| | || | ||||| ||||| || || | || ||| ||
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689
Query 65120 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 65179
||| || || || | ||| || | ||||||| | | | | ||| | || ||
Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
|| || ||||| || |||| |||| ||| ||||| || || |||| ||||| || |
Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | |
Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869
Query 65300 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGAT 65358
|| | | ||||| |||| | | | || || | | ||| | ||| || |
Sbjct 10003870 TGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928
Query 65359 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 65417
|| || || || | ||| || || || | | | |||
Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988
Query 65418 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477
| || || |||||||| ||||| ||| || ||||| || || || || || || ||
Sbjct 10003989 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047
Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGG 65536
|| ||||| ||||| || |||| || ||| | || | ||||| ||| || | ||
Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10004106
Query 65537 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596
|| | |||||| || || || || ||||| |||| |||||| || | || | |||
Sbjct 10004107 GAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATG 10004166
Query 65597 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 65656
||| ||| || | || ||||| | ||||||||||| ||||| || || || ||
Sbjct 10004167 CCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTT 10004226
Query 65657 GAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCAT 65715
|||||| || || || ||||| || ||||| || || |||||| | || || |
Sbjct 10004227 TAGATTTTTGGTAACTATCTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATA-CG-TCTT 10004283
Query 65716 CTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 65770
|| | || |||||||| | || | || |||| || || || || | |||||
Sbjct 10004284 CTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC 10004343
Query 65771 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 65830
| | ||||| | || || ||||| | || || ||||| ||||| |||| |||
Sbjct 10004344 CGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATT 10004403
Query 65831 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890
|| || || ||||| |||| || || ||||| | || ||| | ||| | || || ||
Sbjct 10004404 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTC 10004463
Query 65891 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 65950
| || | || || || || ||| | | | ||||||| | | ||| |
Sbjct 10004464 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CC 10004521
Query 65951 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 66008
| ||||| |||||| |||| |||||| || || ||||| || | ||
Sbjct 10004522 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGG 10004581
Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068
| || ||||| | | || ||||| | |||||| || |||| ||| ||| ||||||
Sbjct 10004582 AGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10004641
Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128
|| |||||||| || ||||| || || ||| | ||| | | | || || || ||
Sbjct 10004642 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10004701
Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188
|| || ||||| || || || |||||| | | | ||| | ||||| ||||||| ||
Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761
Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248
||||| | | || || || ||| ||||||||||| | || | ||| ||||||
Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821
Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308
| || |||| ||| |||| | |||||||| |||||||| || ||| | || || |
Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881
Query 66309 CCACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 66366
|| |||||||||| | | | ||| || || || || || || || ||||| |
Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCA 10004939
Query 66367 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 66426
|||||| ||| | | | | |||||||| || || || ||||| | || |
Sbjct 10004940 TGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAA 10004999
Query 66427 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 66486
| ||||| |||| || | || | || | || ||| | || || || || |
Sbjct 10005000 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10005059
Query 66487 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 66546
| || || | || || || ||||| || || || | |||| || |||||| |
Sbjct 10005060 GTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTC 10005119
Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606
||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| ||
Sbjct 10005120 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10005179
Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666
|| | || | || ||||| |||| || || || ||||||||||| || |||||
Sbjct 10005180 TTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGT 10005239
Query 66667 CTCGTTCGTAAATAATAACCGAGTTGAG 66694
| || || || || || |||||| ||
Sbjct 10005240 CACGATCATAGATTATGGACGAGTTTAG 10005267
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658110117267960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |