Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 226 2e-54 >seq1 Length=23539531 Score = 226 bits (250), Expect = 2e-54 Identities = 394/565 (70%), Gaps = 16/565 (3%) Strand=Plus/Plus Query 20781 ACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGA-TCCGC 20839 |||||||||||||| | || | ||||| || | |||| | | | |||| | ||| | Sbjct 2845935 ACGGCCATCTCCATTTTGATCTTTGGATGTGGATTGTAGTCGACTAT-CTCAAAGTCCTC 2845993 Query 20840 GC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACGGAC 20898 | ||| || |||||| | | ||||| | ||| ||||| ||||| || | Sbjct 2845994 GAAGCGGAA-GTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTC 2846052 Query 20899 GCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGT 20958 |||| || | | ||| || | ||| || || ||||||||| ||| ||||| | | Sbjct 2846053 GCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGTGTAT 2846112 Query 20959 CACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACG 21018 | |||| |||||| |||||||| ||||| |||| ||||| || || || |||| | | Sbjct 2846113 CGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGG 2846172 Query 21019 TCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCT 21078 | || ||||||||| ||||||||| || || || || ||||||||||||||| |||| Sbjct 2846173 TGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCT 2846232 Query 21079 GGTACAGCTGGCAGGACAGCTCCCCCCG------AGCCACGTAAAACTGACACAAAACGT 21132 |||| |||||||| |||||||| || || | ||||||||||| ||| || Sbjct 2846233 GGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGT 2846292 Query 21133 GACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGC 21192 | || || || || |||||| | || |||| || ||||| || |||| | ||||| Sbjct 2846293 GGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGC 2846352 Query 21193 GCCGATC-GTGGGG--CCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCC 21249 | || || | |||| |||| || || | ||| | ||||||||||| | | Sbjct 2846353 GTCGGTCTGAGGGGTTATTCCTG---ATGGTGTCGATCACCTGGCGCAGCTGGTCGATTC 2846409 Query 21250 CCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGA 21309 ||| || ||||| ||||| | ||||| |||||| ||||| |||||||||| Sbjct 2846410 CCTTGCCGCTGTAGTCATCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCACTGGA 2846469 Query 21310 ACCCGTACACCGGCCCCAGATCGCC 21334 | ||||||||||| ||||||||||| Sbjct 2846470 AGCCGTACACCGGGCCCAGATCGCC 2846494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427736278191120