Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq9 102 8e-17 >seq1 Length=23539531 Score = 125 bits (138), Expect = 7e-24 Identities = 979/1566 (63%), Gaps = 41/1566 (3%) Strand=Plus/Plus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 ||||| || || || ||| || || || || || | ||||||||| || || || Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCGGC 152839 || || || |||| ||| | ||| | || | || ||| ||| ||| || ||||| Sbjct 10003463 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTT-CCATAGTTTGGCTCGGC 10003521 Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899 || | | ||| ||||| ||||| ||||| || || || || | ||| || ||||| | Sbjct 10003522 CACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTT 10003581 Query 152900 GATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAAT 152959 ||| || | || | || || |||||| | ||| ||||||| | | | Sbjct 10003582 AATCGTGGACTTGAC-------TG--AGATTTCCCACACCGTCTTGTACAGATCTCGCAC 10003632 Query 152960 GTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCCG 153019 || | ||| || || ||| |||||||| | | | | |||||| ||| Sbjct 10003633 CTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTT 10003692 Query 153020 CATACTACTTGTGT-ACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACAA 153078 ||| | | || ||| | || | || |||| || | ||| | ||||||| | Sbjct 10003693 CATG-TCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCA 10003751 Query 153079 CTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAACG 153138 | || |||||||| |||| || || | | | || || |||| || || | Sbjct 10003752 CCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGG 10003811 Query 153139 ACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACG 153198 | || ||||| | ||| || || || | || || |||||| || || |||| | Sbjct 10003812 ATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTG 10003871 Query 153199 AATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAG 153258 | || || | ||||| || | ||| | |||||||| ||||||||| | | Sbjct 10003872 AGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCG 10003931 Query 153259 TAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAA 153318 | || | | | ||||| ||||| ||||| || |||| ||| | ||| || | Sbjct 10003932 TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGT 10003991 Query 153319 ACGTGCTATACGGCTCA-CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGA 153377 | || || || | | ||| | ||||||| | ||||| || | ||| ||| Sbjct 10003992 AGGTTTCGTATGGACCTTCGGTCTGG-GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAG 10004050 Query 153378 TACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATG 153437 || | ||||| | ||||| | |||| | | |||| | ||||| ||||||| | Sbjct 10004051 TAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAA 10004110 Query 153438 CGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGC 153497 |||| | | || ||||| || || || ||||| |||||||| | ||||||||| | | Sbjct 10004111 CGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTC 10004170 Query 153498 ATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAA 153557 | ||| || || |||| || | ||||| ||||| || || || || |||| | Sbjct 10004171 AAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGA 10004230 Query 153558 CTAATCACGAC-ATGTTTC--ACCACAGAATGCAACAGTTGAAAATCAAACGT--TC-CA 153611 | | || || ||| || | || | |||||| ||| |||| || | Sbjct 10004231 TTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTC--TTGAAA-TCATACGTCTTCTCC 10004287 Query 153612 TTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGG 153671 ||| | |||||| ||| || || ||||||||||| || ||| | || || || Sbjct 10004288 GGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGT 10004347 Query 153672 GCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT 153731 | | |||||| || ||||||| ||||| |||||||| || || ||| ||| Sbjct 10004348 GAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGC 10004407 Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791 || ||||| || | ||| |||||||||||| | |||||||| || | ||||| || || Sbjct 10004408 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACT 10004467 Query 153792 TGAATTTCTATAATAGTACGCATCAATG--TGA-CCGCGGGCATTTGATCGCGAAACTGG 153848 || || || || | | | || | ||| || | || | | | | | Sbjct 10004468 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG---GCCCGA 10004524 Query 153849 CCCTTGTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGC 153908 |||| | ||||| | | |||| | ||| || ||||| || || | || || Sbjct 10004525 CCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGA 10004584 Query 153909 TCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATA 153968 | ||||| | || ||| ||||| || ||||| || || | | ||||| ||| Sbjct 10004585 CCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATG 10004644 Query 153969 AATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCA 154028 || | |||||| | ||| ||||||| | ||| ||||| || | ||||| |||| Sbjct 10004645 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCC 10004704 Query 154029 ATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACT 154088 |||| || | | || || | | || | ||||| ||||||| |||| Sbjct 10004705 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATG 10004764 Query 154089 GCTTGAGCGCCTTTACGCTTGCCG---CCCTGATTTACGTGACGCACCATATTGTTGAAA 154145 || || || ||||||||| ||||||| || | ||| ||| ||| || || Sbjct 10004765 GCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAG 10004824 Query 154146 ACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTG--- 154202 |||| |||||||| | || || ||| ||||| ||||| |||| | || Sbjct 10004825 ACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCC 10004884 Query 154203 -TTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261 ||| | |||| || | ||||| | ||| || || ||| || ||||||||||| Sbjct 10004885 TTTG----CACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940 Query 154262 GGCGCA 154267 |||||| Sbjct 10004941 GGCGCA 10004946 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || ||||||||||| || | |||| ||||| Sbjct 10088924 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 10088865 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| || Sbjct 10088864 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 10088806 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | ||| | || || | || || ||||||| || | ||||| Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | || || ||||| || ||||| Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || ||| || |||| || || Sbjct 4075124 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4075065 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || || |||||||||| |||||||| || || ||||| || || || | Sbjct 4075064 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4075005 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||| | ||||||||||| | ||| | |||||| Sbjct 4075004 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 4074945 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAG 139766 ||||| | ||||| ||||| || ||||||| Sbjct 4074944 CCGGTGAGGGTTTTCACGAAGATCTGCATAG 4074914 >seq9 Length=20829647 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || ||||| || || ||||| || ||| Sbjct 5792468 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5792527 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||| || ||||| || || || | |||| ||| |||||||| || || Sbjct 5792528 CAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 5792587 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 5792588 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGAC 5792647 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | ||||||||||||| || || ||||| ||||||||| Sbjct 5792648 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 5792696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496016756104800