Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1 125 7e-24
seq9 102 8e-17
>seq1
Length=23539531
Score = 125 bits (138), Expect = 7e-24
Identities = 979/1566 (63%), Gaps = 41/1566 (3%)
Strand=Plus/Plus
Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780
||||| || || || ||| || || || || || | ||||||||| || || ||
Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462
Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGG-TCGGC 152839
|| || || |||| ||| | ||| | || | || ||| ||| ||| || |||||
Sbjct 10003463 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTT-CCATAGTTTGGCTCGGC 10003521
Query 152840 CATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCATGTC 152899
|| | | ||| ||||| ||||| ||||| || || || || | ||| || ||||| |
Sbjct 10003522 CACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTT 10003581
Query 152900 GATCATGAATTTTCCGTTGTTGTGCCAGCATTCCCAGATTGTCATGTACAGCTTTTTAAT 152959
||| || | || | || || |||||| | ||| ||||||| | | |
Sbjct 10003582 AATCGTGGACTTGAC-------TG--AGATTTCCCACACCGTCTTGTACAGATCTCGCAC 10003632
Query 152960 GTTGTCGGGAATTTCATCTATGGAAGCTATCGATCCTCGGTTTGCCATGATCCTTTTCCG 153019
|| | ||| || || ||| |||||||| | | | | |||||| |||
Sbjct 10003633 CTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTT 10003692
Query 153020 CATACTACTTGTGT-ACAGATTCAATGCGATTAGATCATCGACCAAGTAGCGGTTGACAA 153078
||| | | || ||| | || | || |||| || | ||| | ||||||| |
Sbjct 10003693 CATG-TCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCA 10003751
Query 153079 CTTGAAATTCGCCCGACAATACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAACG 153138
| || |||||||| |||| || || | | | || || |||| || || |
Sbjct 10003752 CCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGG 10003811
Query 153139 ACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACG 153198
| || ||||| | ||| || || || | || || |||||| || || |||| |
Sbjct 10003812 ATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTG 10003871
Query 153199 AATTACGTAATCCGTGTTTTTGTATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAG 153258
| || || | ||||| || | ||| | |||||||| ||||||||| | |
Sbjct 10003872 AGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCG 10003931
Query 153259 TAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAA 153318
| || | | | ||||| ||||| ||||| || |||| ||| | ||| || |
Sbjct 10003932 TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGT 10003991
Query 153319 ACGTGCTATACGGCTCA-CTGTCAGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGA 153377
| || || || | | ||| | ||||||| | ||||| || | ||| |||
Sbjct 10003992 AGGTTTCGTATGGACCTTCGGTCTGG-GCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAG 10004050
Query 153378 TACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATG 153437
|| | ||||| | ||||| | |||| | | |||| | ||||| ||||||| |
Sbjct 10004051 TAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAA 10004110
Query 153438 CGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGC 153497
|||| | | || ||||| || || || ||||| |||||||| | ||||||||| | |
Sbjct 10004111 CGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTC 10004170
Query 153498 ATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATTTAAA 153557
| ||| || || |||| || | ||||| ||||| || || || || |||| |
Sbjct 10004171 AAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGA 10004230
Query 153558 CTAATCACGAC-ATGTTTC--ACCACAGAATGCAACAGTTGAAAATCAAACGT--TC-CA 153611
| | || || ||| || | || | |||||| ||| |||| || |
Sbjct 10004231 TTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTC--TTGAAA-TCATACGTCTTCTCC 10004287
Query 153612 TTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGG 153671
||| | |||||| ||| || || ||||||||||| || ||| | || || ||
Sbjct 10004288 GGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGT 10004347
Query 153672 GCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTT 153731
| | |||||| || ||||||| ||||| |||||||| || || ||| |||
Sbjct 10004348 GAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGC 10004407
Query 153732 TGATTGCTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCT 153791
|| ||||| || | ||| |||||||||||| | |||||||| || | ||||| || ||
Sbjct 10004408 TGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACT 10004467
Query 153792 TGAATTTCTATAATAGTACGCATCAATG--TGA-CCGCGGGCATTTGATCGCGAAACTGG 153848
|| || || || | | | || | ||| || | || | | | | |
Sbjct 10004468 TGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTG---GCCCGA 10004524
Query 153849 CCCTTGTCTTCGTAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGC 153908
|||| | ||||| | | |||| | ||| || ||||| || || | || ||
Sbjct 10004525 CCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGA 10004584
Query 153909 TCGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATA 153968
| ||||| | || ||| ||||| || ||||| || || | | ||||| |||
Sbjct 10004585 CCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCATG 10004644
Query 153969 AATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCA 154028
|| | |||||| | ||| ||||||| | ||| ||||| || | ||||| ||||
Sbjct 10004645 AAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCC 10004704
Query 154029 ATGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACT 154088
|||| || | | || || | | || | ||||| ||||||| ||||
Sbjct 10004705 GTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATG 10004764
Query 154089 GCTTGAGCGCCTTTACGCTTGCCG---CCCTGATTTACGTGACGCACCATATTGTTGAAA 154145
|| || || ||||||||| ||||||| || | ||| ||| ||| || ||
Sbjct 10004765 GCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTAAAG 10004824
Query 154146 ACCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTG--- 154202
|||| |||||||| | || || ||| ||||| ||||| |||| | ||
Sbjct 10004825 ACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTGCCC 10004884
Query 154203 -TTGCGGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCAT 154261
||| | |||| || | ||||| | ||| || || ||| || |||||||||||
Sbjct 10004885 TTTG----CACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCAT 10004940
Query 154262 GGCGCA 154267
||||||
Sbjct 10004941 GGCGCA 10004946
Score = 102 bits (112), Expect = 8e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || ||||||||||| || | |||| |||||
Sbjct 10088924 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 10088865
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || ||||| |||||||||| |||||||| ||||| || ||||||||||| ||
Sbjct 10088864 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC-CTG 10088806
Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734
| | || | ||| | | ||| | || || | || || ||||||| || | |||||
Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746
Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| || | || || ||||| || |||||
Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || ||||| || || ||||| || ||| || |||| || ||
Sbjct 4075124 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4075065
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||| || || || |||||||||| |||||||| || || ||||| || || || |
Sbjct 4075064 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4075005
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || || | | || | ||||| | ||||||||||| | ||| | ||||||
Sbjct 4075004 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 4074945
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATAG 139766
||||| | ||||| ||||| || |||||||
Sbjct 4074944 CCGGTGAGGGTTTTCACGAAGATCTGCATAG 4074914
>seq9
Length=20829647
Score = 102 bits (112), Expect = 8e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||||| || ||||||| || ||||| || || ||||| || |||
Sbjct 5792468 GCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 5792527
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| || ||||| || || || | |||| ||| |||||||| || ||
Sbjct 5792528 CAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 5792587
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| || || ||||| ||| || || | | || | || |||| ||||| ||
Sbjct 5792588 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGAC 5792647
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||| | ||| | ||||||||||||| || || ||||| |||||||||
Sbjct 5792648 CTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATA 5792696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496016756104800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |