Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 352 4e-92 seq2 187 4e-42 >seq1 Length=23539531 Score = 352 bits (390), Expect = 4e-92 Identities = 1226/1892 (65%), Gaps = 46/1892 (2%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| |||| ||| || || || || || || ||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 78944 |||||| || | | ||| || |||||||| | || || || | ||||| Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630 Query 78945 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCT-GCCATAATCCTATT 78998 | ||||||| | ||| | || | ||||| ||||| || || | || ||| || Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689 Query 78999 CTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 79058 ||| || || || | ||| || | ||||||| | | | | ||| | || || Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749 Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 || || ||||| || |||| |||| ||| ||||| || || |||| || || || | Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || |||| || ||||| || ||||| || ||||| || || || | | Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869 Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTA-TCTTTTAGAGATTCCCAATCCCAAAGAT 79237 || | | ||||| ||| | | | || || | | ||| ||||| || | Sbjct 10003870 TGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCT 79296 | || || | ||| | || || || | ||| || || || | || ||| Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988 Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356 ||| ||||| || || ||||| | | ||| | ||| || || || || || || || Sbjct 10003989 C-GTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047 Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAAT 79413 || ||||| ||||| || |||| || ||| |||| | |||||| ||| || | Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTAC 10004104 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 || || | |||||| || || || || ||||| |||| |||||| || | || | | Sbjct 10004105 GGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGA 10004164 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 || ||| ||| || | || ||||| | ||||||||||| ||||| || || || Sbjct 10004165 TGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTG 10004224 Query 79534 TTGAGATTCCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT 79590 || ||||| || ||||| ||||| || ||||| || || |||||| | ||| Sbjct 10004225 TTTAGATTTTTGGTAACTAT--CTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATA-CGT 10004280 Query 79591 CCATCTA-----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCT 79645 | ||| | || |||||||| | |||| || |||| || || || || | || Sbjct 10004281 CT-TCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCT 10004339 Query 79646 CATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTA 79705 ||| | | ||||| | ||||| ||||| | ||| || ||||||||||| |||| Sbjct 10004340 CATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTA 10004399 Query 79706 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAG 79765 ||| || || || ||||| |||| || || ||||| | || ||| ||||| | || | Sbjct 10004400 CATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGG 10004459 Query 79766 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT 79825 | || | || | || || || || ||| | | | ||||||| | | ||| Sbjct 10004460 TCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG 10004519 Query 79826 ATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 | | ||||| ||||||| || | |||||| || || ||||| || || Sbjct 10004520 --CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTC 10004577 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 || | || ||||| | || || ||||| | |||||| || || | ||| || || Sbjct 10004578 GTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCG 10004637 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003 |||||| |||||||| || ||||| || || ||| ||||| | | | || ||| || Sbjct 10004638 TTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTC 10004697 Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 80063 || || || ||||| || || || |||||| | | | ||| || ||||| ||||||| Sbjct 10004698 TTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAG 10004757 Query 80064 GTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123 || ||||| | | || || || ||| ||||||||||| | || | ||| || Sbjct 10004758 ATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATT 10004817 Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183 |||| | || |||| ||| |||| | |||||||| |||||||| || ||| | || | Sbjct 10004818 ATTAAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGA 10004877 Query 80184 GCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241 | | || | |||||||| | | | ||| || || || || || || || ||| Sbjct 10004878 GGTGCCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAG 10004935 Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301 || | |||||| ||| | | | | |||||||| ||| || | ||||| | Sbjct 10004936 ATCATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTC 10004995 Query 80302 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 80361 || || ||||| |||| || | || | || | || ||| | || || || Sbjct 10004996 AGAAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGAT 10005055 Query 80362 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 80421 || || || || | || ||||| ||||| || || || | |||| || |||||| Sbjct 10005056 GCATGTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCC 10005115 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 | ||| ||||| | ||| || ||||| | ||| ||||| |||| || ||||||| Sbjct 10005116 TCTCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTT 10005175 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 ||| | || | || || || |||| || || || ||||||||||| || | Sbjct 10005176 CCGTTTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCA 10005235 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573 ||||| || || || || || |||||| || Sbjct 10005236 AAGTCACGATCATAGATTATGGACGAGTTTAG 10005267 >seq2 Length=21544594 Score = 187 bits (206), Expect = 4e-42 Identities = 550/841 (65%), Gaps = 15/841 (2%) Strand=Plus/Plus Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719 |||||||| ||||| || |||| ||||||||||| || || ||||| |||| Sbjct 8575020 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC 8575079 Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779 ||||| | |||||||| | ||| || || | || || || ||| || ||||| Sbjct 8575080 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 8575139 Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839 || | ||| | ||||| || || || || || ||||| || || ||||| Sbjct 8575140 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATG 8575199 Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899 || || | || || || || || | || || || || || ||||||| ||||| || Sbjct 8575200 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCG 8575259 Query 49900 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 49955 || ||||| | | | || | | ||| | |||| | || | ||||| Sbjct 8575260 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 8575315 Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || || || |||||||||| |||||||| | | || || |||||||| || || Sbjct 8575316 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 8575375 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAA 50073 | ||| ||||| || || ||||| |||||||| || ||||| || || || | | ||| Sbjct 8575376 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 8575435 Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGT 50131 |||||| || || || ||||||||||| | | | ||| || || | || || Sbjct 8575436 --GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTG 8575493 Query 50132 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| | ||||| || ||||| || ||| ||||||||||| || Sbjct 8575494 GACGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATA 8575553 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || || || || || | | | | ||| | ||||| |||||||||| ||| Sbjct 8575554 GCGTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTG 8575613 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 ||||| ||||| || | ||| || ||||| ||||| || |||||||| |||| ||||| Sbjct 8575614 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCC 8575673 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 || |||||||| || || ||||| || | | || || || || || || ||| | Sbjct 8575674 GTGATCTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAG 8575733 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 || ||||| || |||| || || || ||||| |||| | | || | | Sbjct 8575734 GCGGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGC 8575793 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || ||| | | || || || | ||| || || || || ||||| || || ||||| ||| Sbjct 8575794 CAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCC 8575853 Query 50491 T 50491 | Sbjct 8575854 T 8575854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718200393875160