Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1 352 4e-92
seq2 187 4e-42
>seq1
Length=23539531
Score = 352 bits (390), Expect = 4e-92
Identities = 1226/1892 (65%), Gaps = 46/1892 (2%)
Strand=Plus/Plus
Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827
||||| ||||| |||| ||| || || || || || || ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 78944
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 78945 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCT-GCCATAATCCTATT 78998
| ||||||| | ||| | || | ||||| ||||| || || | || ||| ||
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689
Query 78999 CTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 79058
||| || || || | ||| || | ||||||| | | | | ||| | || ||
Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
|| || ||||| || |||| |||| ||| ||||| || || |||| || || || |
Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178
|||||||| || |||| || ||||| || ||||| || ||||| || || || | |
Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869
Query 79179 ACTATTTCTAAGACCGTATGATCTGATTTTA-TCTTTTAGAGATTCCCAATCCCAAAGAT 79237
|| | | ||||| ||| | | | || || | | ||| ||||| || |
Sbjct 10003870 TGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928
Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCT 79296
| || || | ||| | || || || | ||| || || || | || |||
Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988
Query 79297 GTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCG 79356
||| ||||| || || ||||| | | ||| | ||| || || || || || || ||
Sbjct 10003989 C-GTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047
Query 79357 TAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGGCTATCAAAT 79413
|| ||||| ||||| || |||| || ||| |||| | |||||| ||| || |
Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG---GCTTCTTCGCTTTCGTAC 10004104
Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473
|| || | |||||| || || || || ||||| |||| |||||| || | || | |
Sbjct 10004105 GGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGA 10004164
Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533
|| ||| ||| || | || ||||| | ||||||||||| ||||| || || ||
Sbjct 10004165 TGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTG 10004224
Query 79534 TTGAGATTCCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGT 79590
|| ||||| || ||||| ||||| || ||||| || || |||||| | |||
Sbjct 10004225 TTTAGATTTTTGGTAACTAT--CTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATA-CGT 10004280
Query 79591 CCATCTA-----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCT 79645
| ||| | || |||||||| | |||| || |||| || || || || | ||
Sbjct 10004281 CT-TCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCT 10004339
Query 79646 CATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTA 79705
||| | | ||||| | ||||| ||||| | ||| || ||||||||||| ||||
Sbjct 10004340 CATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTA 10004399
Query 79706 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAG 79765
||| || || || ||||| |||| || || ||||| | || ||| ||||| | || |
Sbjct 10004400 CATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGG 10004459
Query 79766 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGT 79825
| || | || | || || || || ||| | | | ||||||| | | |||
Sbjct 10004460 TCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG 10004519
Query 79826 ATCTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883
| | ||||| ||||||| || | |||||| || || ||||| || ||
Sbjct 10004520 --CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTC 10004577
Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943
|| | || ||||| | || || ||||| | |||||| || || | ||| || ||
Sbjct 10004578 GTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCG 10004637
Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 80003
|||||| |||||||| || ||||| || || ||| ||||| | | | || ||| ||
Sbjct 10004638 TTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTC 10004697
Query 80004 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 80063
|| || || ||||| || || || |||||| | | | ||| || ||||| |||||||
Sbjct 10004698 TTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAG 10004757
Query 80064 GTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 80123
|| ||||| | | || || || ||| ||||||||||| | || | ||| ||
Sbjct 10004758 ATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATT 10004817
Query 80124 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATA 80183
|||| | || |||| ||| |||| | |||||||| |||||||| || ||| | || |
Sbjct 10004818 ATTAAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGA 10004877
Query 80184 GCTTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 80241
| | || | |||||||| | | | ||| || || || || || || || |||
Sbjct 10004878 GGTGCCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAG 10004935
Query 80242 ATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTA 80301
|| | |||||| ||| | | | | |||||||| ||| || | ||||| |
Sbjct 10004936 ATCATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTC 10004995
Query 80302 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 80361
|| || ||||| |||| || | || | || | || ||| | || || ||
Sbjct 10004996 AGAAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGAT 10005055
Query 80362 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 80421
|| || || || | || ||||| ||||| || || || | |||| || ||||||
Sbjct 10005056 GCATGTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCC 10005115
Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481
| ||| ||||| | ||| || ||||| | ||| ||||| |||| || |||||||
Sbjct 10005116 TCTCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTT 10005175
Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541
||| | || | || || || |||| || || || ||||||||||| || |
Sbjct 10005176 CCGTTTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCA 10005235
Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAG 80573
||||| || || || || || |||||| ||
Sbjct 10005236 AAGTCACGATCATAGATTATGGACGAGTTTAG 10005267
>seq2
Length=21544594
Score = 187 bits (206), Expect = 4e-42
Identities = 550/841 (65%), Gaps = 15/841 (2%)
Strand=Plus/Plus
Query 49660 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 49719
|||||||| ||||| || |||| ||||||||||| || || ||||| ||||
Sbjct 8575020 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC 8575079
Query 49720 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAAT 49779
||||| | |||||||| | ||| || || | || || || ||| || |||||
Sbjct 8575080 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 8575139
Query 49780 TCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 49839
|| | ||| | ||||| || || || || || ||||| || || |||||
Sbjct 8575140 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATG 8575199
Query 49840 CCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCT 49899
|| || | || || || || || | || || || || || ||||||| ||||| ||
Sbjct 8575200 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCG 8575259
Query 49900 GTTATAATAGATCTAACGGTTTCT-TCACTC---GGTGGATGCAATAAATGTTTAAACAT 49955
|| ||||| | | | || | | ||| | |||| | || | |||||
Sbjct 8575260 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 8575315
Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015
|| || || |||||||||| |||||||| | | || || |||||||| || ||
Sbjct 8575316 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 8575375
Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAA--TGACCCAGAA 50073
| ||| ||||| || || ||||| |||||||| || ||||| || || || | | |||
Sbjct 8575376 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 8575435
Query 50074 AAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGT 50131
|||||| || || || ||||||||||| | | | ||| || || | || ||
Sbjct 8575436 --GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTG 8575493
Query 50132 CATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190
| | ||||| | ||||| || ||||| || ||| ||||||||||| ||
Sbjct 8575494 GACGAGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATA 8575553
Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250
|| || || || || | | | | ||| | ||||| |||||||||| |||
Sbjct 8575554 GCGTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTG 8575613
Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310
||||| ||||| || | ||| || ||||| ||||| || |||||||| |||| |||||
Sbjct 8575614 TACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCC 8575673
Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370
|| |||||||| || || ||||| || | | || || || || || || ||| |
Sbjct 8575674 GTGATCTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAG 8575733
Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430
|| ||||| || |||| || || || ||||| |||| | | || | |
Sbjct 8575734 GCGGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGC 8575793
Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490
|| ||| | | || || || | ||| || || || || ||||| || || ||||| |||
Sbjct 8575794 CAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCC 8575853
Query 50491 T 50491
|
Sbjct 8575854 T 8575854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718200393875160
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