Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1 298 7e-76
>seq1
Length=23539531
Score = 298 bits (330), Expect = 7e-76
Identities = 1200/1878 (64%), Gaps = 42/1878 (2%)
Strand=Plus/Plus
Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850
||||| || || |||||||||| | | || | || || || ||||||||||| ||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910
||||| ||||| |||| |||||| || || || || || |||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970
||||| | || || || | ||||||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 71027
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 71028 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATT 71081
| ||||||| | ||| | || | ||||| ||||| || || | || ||| ||
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689
Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141
|| || || || | ||| || | ||||||| | | | | |||| | || ||
Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
|| || ||||| || |||| |||| || ||||| || || |||| ||||| || |
Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | ||
Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869
Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTA-TCTTTTAGAGATTCCCAATTCCAAAGAT 71320
|| | | ||| || || | | | || || | | ||| | ||| || |
Sbjct 10003870 TGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928
Query 71321 CCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCT 71379
|| ||| || || || || || | || |||
Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988
Query 71380 GCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439
| || || |||||||| ||||| | | ||| ||||| || || || || || || |||
Sbjct 10003989 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047
Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCCGGGCTATCAAAT 71496
|| ||||| ||||| || |||| || ||| |||| | | |||| ||| || |
Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTC---GCTTTCGTAC 10004104
Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556
|| || | |||||| || || || || ||||| |||| ||||| || | || |
Sbjct 10004105 GGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGA 10004164
Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616
|| ||| ||| || | || ||||| | ||||||||||| ||||| || || ||
Sbjct 10004165 TGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTG 10004224
Query 71617 TTGAGATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673
|| |||||| || ||||| ||||| || ||||| || || |||||| | ||
Sbjct 10004225 TTTAGATTTTTGGTAACTAT--CTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATACGTC 10004281
Query 71674 CCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730
|| | || |||| ||| | ||| | || |||| || || || || | ||||
Sbjct 10004282 TTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCA 10004341
Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790
| | || ||||| | ||||| ||||| | || || ||||| ||||| |||| |
Sbjct 10004342 TCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACA 10004401
Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850
|| || || || ||||| |||| || || ||||| | || || ||||| | || ||
Sbjct 10004402 TTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTC 10004461
Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910
|| | || | || || || || ||| | | | ||||||| | | |||
Sbjct 10004462 TCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG-- 10004519
Query 71911 CTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968
| | ||||| ||||||| || | |||||| || || ||||| | | ||
Sbjct 10004520 CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGT 10004579
Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028
| || ||||| | | || ||||| | ||||| || || | | | || ||||
Sbjct 10004580 GGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTT 10004639
Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088
|||| |||||||| || ||||| || || ||| ||||| | | | || ||| || |
Sbjct 10004640 TCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTT 10004699
Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148
| || || ||||| || || || |||||| | | | ||| || ||||| ||||||| |
Sbjct 10004700 TGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGAT 10004759
Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208
| ||||| | | || || || ||| ||||||||||| | || | ||| ||||
Sbjct 10004760 AAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTAT 10004819
Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268
|| | || |||| ||| |||| | |||||||| | |||||| || ||| | || ||
Sbjct 10004820 TAAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGG 10004879
Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326
| || | |||||||| | ||| ||| || || || || || || || |||||
Sbjct 10004880 TGCCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGAT 10004937
Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386
| |||||| ||| | | | | |||||||| || || || ||||| | ||
Sbjct 10004938 CATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAG 10004997
Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446
|| ||||| |||| || | || | || | || ||| | || || || ||
Sbjct 10004998 AAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGC 10005057
Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506
|| || || | || ||||| ||||| || || || | |||| || ||||||
Sbjct 10005058 ATGTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTC 10005117
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
| ||| ||||| | ||| || ||||| | ||||||||| |||| || |||||||
Sbjct 10005118 TCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCC 10005177
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
||| | || | || ||||| |||| || || || ||||||||||| || |||
Sbjct 10005178 GTTTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAA 10005237
Query 72627 GTCTCGTTCGTAAATAAT 72644
||| || || || || ||
Sbjct 10005238 GTCACGATCATAGATTAT 10005255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671075282380440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |