Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 298 7e-76 >seq1 Length=23539531 Score = 298 bits (330), Expect = 7e-76 Identities = 1200/1878 (64%), Gaps = 42/1878 (2%) Strand=Plus/Plus Query 70791 CTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCC 70850 ||||| || || |||||||||| | | || | || || || ||||||||||| || Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 70851 TGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGG 70910 ||||| ||||| |||| |||||| || || || || || |||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 70911 ATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 70970 ||||| | || || || | ||||||||| ||||| ||||| || || | || || || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 70971 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 71027 |||||| || | | ||| || |||||||| | || || || | ||||| Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630 Query 71028 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCA-ATAATCCTATT 71081 | ||||||| | ||| | || | ||||| ||||| || || | || ||| || Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689 Query 71082 TTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAAC 71141 || || || || | ||| || | ||||||| | | | | |||| | || || Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749 Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 || || ||||| || |||| |||| || ||||| || || |||| ||||| || | Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 || ||||| || |||| || ||||| || |||||||| ||||| || || || | || Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869 Query 71262 ACTATTTCTAAGACCATGTGATCGGATTTTA-TCTTTTAGAGATTCCCAATTCCAAAGAT 71320 || | | ||| || || | | | || || | | ||| | ||| || | Sbjct 10003870 TGAGTTCCGGACACCGTGCT-TCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928 Query 71321 CCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATCCT 71379 || ||| || || || || || | || ||| Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988 Query 71380 GCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439 | || || |||||||| ||||| | | ||| ||||| || || || || || || ||| Sbjct 10003989 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047 Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCCGGGCTATCAAAT 71496 || ||||| ||||| || |||| || ||| |||| | | |||| ||| || | Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTC---GCTTTCGTAC 10004104 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 || || | |||||| || || || || ||||| |||| ||||| || | || | Sbjct 10004105 GGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGA 10004164 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || ||| ||| || | || ||||| | ||||||||||| ||||| || || || Sbjct 10004165 TGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTG 10004224 Query 71617 TTGAGATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTC 71673 || |||||| || ||||| ||||| || ||||| || || |||||| | || Sbjct 10004225 TTTAGATTTTTGGTAACTAT--CTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATACGTC 10004281 Query 71674 CCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCA 71730 || | || |||| ||| | ||| | || |||| || || || || | |||| Sbjct 10004282 TTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCA 10004341 Query 71731 TTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | | || ||||| | ||||| ||||| | || || ||||| ||||| |||| | Sbjct 10004342 TCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACA 10004401 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || || || || ||||| |||| || || ||||| | || || ||||| | || || Sbjct 10004402 TTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTC 10004461 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTAT 71910 || | || | || || || || ||| | | | ||||||| | | ||| Sbjct 10004462 TCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG-- 10004519 Query 71911 CTCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 | | ||||| ||||||| || | |||||| || || ||||| | | || Sbjct 10004520 CCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGT 10004579 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 | || ||||| | | || ||||| | ||||| || || | | | || |||| Sbjct 10004580 GGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTT 10004639 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| |||||||| || ||||| || || ||| ||||| | | | || ||| || | Sbjct 10004640 TCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTT 10004699 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || || ||||| || || || |||||| | | | ||| || ||||| ||||||| | Sbjct 10004700 TGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGAT 10004759 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | | || || || ||| ||||||||||| | || | ||| |||| Sbjct 10004760 AAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTAT 10004819 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 || | || |||| ||| |||| | |||||||| | |||||| || ||| | || || Sbjct 10004820 TAAAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGG 10004879 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || | |||||||| | ||| ||| || || || || || || || ||||| Sbjct 10004880 TGCCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGAT 10004937 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | |||||| ||| | | | | |||||||| || || || ||||| | || Sbjct 10004938 CATGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAG 10004997 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || ||||| |||| || | || | || | || ||| | || || || || Sbjct 10004998 AAGGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGC 10005057 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 || || || | || ||||| ||||| || || || | |||| || |||||| Sbjct 10005058 ATGTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTC 10005117 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | ||| ||||| | ||| || ||||| | ||||||||| |||| || ||||||| Sbjct 10005118 TCCATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCC 10005177 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 ||| | || | || ||||| |||| || || || ||||||||||| || ||| Sbjct 10005178 GTTTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAA 10005237 Query 72627 GTCTCGTTCGTAAATAAT 72644 ||| || || || || || Sbjct 10005238 GTCACGATCATAGATTAT 10005255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671075282380440