Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 seq4 93.3 4e-14 >seq1 Length=23539531 Score = 131 bits (144), Expect = 2e-25 Identities = 707/1115 (63%), Gaps = 44/1115 (4%) Strand=Plus/Plus Query 156492 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTACTGTGAAACG 156551 ||||||| || || |||||||| |||| ||| || | | | || || ||| Sbjct 10003743 GGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACG 10003802 Query 156552 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 156611 | || || || || |||||| | ||| || || || | || || |||||| || | Sbjct 10003803 GCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAA 10003862 Query 156612 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATT--TTCAACTGTGACCAGTC 156669 | |||| ||| || || | |||| || | || || | | ||||| | |||||| Sbjct 10003863 CGAGCAGTGAGTTCCGGACACCGTGCTTCT-TA-ATGGACTCCTTCAATTTCTGCCAGTC 10003920 Query 156670 CCATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTT 156729 ||| | || || ||| | | ||||| ||||| ||||| ||||||| |||| | Sbjct 10003921 CCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGG 10003980 Query 156730 GCTACCGGCAAACGTGCTATAAGGCTCA-CTAACAGATGCCAGTTCGTAACTGGCCTCGA 156788 ||| || | | || || || | | | | ||||||||| | ||||| || | Sbjct 10003981 GCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGG-GCCAGTTCGCAGCTGGCTTCCA 10004039 Query 156789 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 156848 || ||| || | |||||| || || | |||||| ||| |||| | ||||| Sbjct 10004040 AGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTT 10004099 Query 156849 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGG 156908 ||||||| | |||| | || || ||||| || || || ||||| |||||||| | || Sbjct 10004100 CGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGG 10004159 Query 156909 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAA 156968 ||||||| | || ||| || || |||| | | || || ||||| |||||| | Sbjct 10004160 GACGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTA 10004219 Query 156969 TTTTATTCAAACTATCC---ACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAA 157025 | || || | | | | |||| | | |||| | || || | |||||| ||| Sbjct 10004220 TCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGC--TTCTTGAAA-TCAT 10004276 Query 157026 AAGTATCATTAT---TGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAG 157082 | || | | ||| | | |||| ||| || || || | || || || ||| Sbjct 10004277 ACGTCTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAA 10004336 Query 157083 TTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATC 157142 | || || || | | |||||| || ||||||| ||||| |||||||| || || | Sbjct 10004337 TCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGC 10004396 Query 157143 CGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGC 157202 | ||| || ||||| || | |||||||||||||||| | | ||||||||| | | Sbjct 10004397 CTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTC 10004456 Query 157203 CGGTTTCGGCTTGAATTTCTATGATGTTGC---------GCATTAA--TGTAACCG--CG 157249 |||| || |||| || |||||| || | ||| | |||||| || Sbjct 10004457 CGGTCTCCACTTGCGCCTCAATGATG--GCAAACCACAGGGATTGAGCCTTAACCGTTCG 10004514 Query 157250 GGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCA 157309 | || || || || ||| | | |||||| | | |||| | ||| || ||| Sbjct 10004515 G---TTGGCCCG----AC---CCTCT-TGCTCGTATTTCTCGTACAGCTTTTCGAATTCA 10004563 Query 157310 TCACCATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCG 157369 || || || |||| ||| ||||||| || || ||||| | ||||| |||| Sbjct 10004564 TCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCG 10004623 Query 157370 TTTTCTTCAACGCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGC 157429 || | || ||||||||||| || | |||||| | ||| | |||| | || ||| || Sbjct 10004624 TTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGT 10004683 Query 157430 GCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAA 157489 || | ||||| |||| |||| || | | | || | | || | Sbjct 10004684 GCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAG 10004743 Query 157490 TGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTTCGCTTGCCACCT---TGATCCACG 157546 ||||| ||||| | || | || ||| || |||||||| ||| |||||||| Sbjct 10004744 TGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACA 10004803 Query 157547 TGACGCACCATATTATTAAAAACTCGCAGCATTGG 157581 | ||| ||| ||||||||| || | |||||| || Sbjct 10004804 TAACGAGCCACATTATTAAAGACCCTCAGCATGGG 10004838 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 10088870 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 10088811 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 10088810 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 10088751 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 10088750 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 >seq4 Length=24153973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || || |||| || || || || || |||||||||||| | Sbjct 3789601 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3789660 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||| || || || |||||||||| |||||||| || || Sbjct 3789661 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 3789720 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || || || ||| || || | | || | ||||||| || || || Sbjct 3789721 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACC 3789780 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 || | ||| | |||||||| || | || || ||||| || |||||| || Sbjct 3789781 TCCAAAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATACCT 3789831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506966113216080