Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 306 5e-78 seq9 212 9e-50 seq1 174 2e-38 >seq2 Length=21544594 Score = 306 bits (338), Expect = 5e-78 Identities = 583/850 (69%), Gaps = 34/850 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC-GAT 125096 ||||| |||| || || ||||| ||||| ||||| ||| ||||||||||||| ||| || Sbjct 8575854 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCT-TACTGAC 8575796 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 ||| | || ||| || ||||| | || || |||||| | ||||||||||| Sbjct 8575795 TGGCAC---CGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTT 8575739 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACC 125216 |||| ||| ||||| ||||| ||||| || ||| || |||||| ||| ||| || Sbjct 8575738 GCCGCCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAG 8575679 Query 125217 ATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 || | |||| ||||| ||||| ||||| ||| || ||||||||||||||||| Sbjct 8575678 ATCACGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAG 8575619 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTT 125336 |||||| | |||| |||| ||||| || ||||| || | | | || || Sbjct 8575618 ATGTACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTC 8575559 Query 125337 AACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGGTG 125392 ||||| ||||| ||| ||||| || || || ||||| | |||| | || Sbjct 8575558 AACGCTATCGAAACGATGCCGGCT----GTGAAGCGCAAGGCAGACTGGGCCCTGTCCTG 8575503 Query 125393 GATCGATGACGACAAGT---CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGA 125449 |||| | | ||||| || | || || | | | || || |||||||| || Sbjct 8575502 GATC-TCGTC--CAAGTCGGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGA 8575446 Query 125450 GGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCAT 125509 |||||||||||| || || || || |||| || ||||| ||||||||||| || || Sbjct 8575445 GGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGAT 8575386 Query 125510 GCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTT 125569 ||| ||| |||| | |||||| | || ||||| ||||||||| | ||||| ||||| Sbjct 8575385 GCCTGGATTGACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTT 8575326 Query 125570 TGCCATTCTACTGTTTC-GCAACT--ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAA 125626 |||| | || |||| | ||| || | ||| ||| || | | |||| Sbjct 8575325 TGCCGTGCTGATGTTCCAGCACCTGGTGCAGCGACCCAAGCG-----CGAGCG------- 8575278 Query 125627 GGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCT 125686 ||||| | || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 8575277 CATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCT 8575218 Query 125687 ACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGC 125746 || |||| |||| |||||||||||| | || |||| | ||||||| ||||| || || Sbjct 8575217 GCCCGTCAATTTGATCGGCATGAACTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGC 8575158 Query 125747 AGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGA 125806 || ||| | || |||||| | | ||||| |||||| |||| || || ||| | Sbjct 8575157 GGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACAACACCAAAAACCCATTTAA 8575098 Query 125807 TTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGA 125866 |||||| | ||||| || || || ||||||||||||||||| |||||||| || Sbjct 8575097 CTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTTTCGAAAAGAAGGTGGCGGA 8575038 Query 125867 GTACAAACGC 125876 |||| | ||| Sbjct 8575037 GTACCAGCGC 8575028 >seq9 Length=20829647 Score = 212 bits (234), Expect = 9e-50 Identities = 390/570 (68%), Gaps = 14/570 (2%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || ||||| || ||||||| || ||||||||||| || |||||| Sbjct 5437824 TTGCGGAAGAAGATCACGCCGGCGCGCGGACCTCGCAGCGTCTTGTGCGTGGTGGTGGTC 5437883 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| |||| || || || || | | | | || | | |||||| | Sbjct 5437884 ACAATGTCGGCCCACTCGAACGGCGATGGTATCAATCCGGCGGCCACAATGCCCGCCACA 5437943 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | ||||| ||||| ||||| || Sbjct 5437944 TGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCATCGCAAATCTGACGGAAACGGGCG 5438003 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| | || | ||||| | ||||||| ||||| | | || ||| Sbjct 5438004 TAGTCCAGCAGACGGGAGTAGCACGAGATGCCGGCAATGATGATCTGCGGACGGAAGTTC 5438063 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || | ||| | ||||||| || || |||| || | ||| |||||| Sbjct 5438064 TTGGCCGCCTCCGCCAACTTGTCGTAGTCGATGATGCCCGTCTCCGGGTTCACTTTGTAC 5438123 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| ||||| || || | || ||| ||| ||| Sbjct 5438124 GGCATGCTCTCGAAGAAGATCGATGTGGCCGATATCTTCTTGGTGGGCGTGAAGAAACCG 5438183 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| |||||| || ||||||||||| | |||||||| | | |||| || | Sbjct 5438184 TGCGTCAAGTGGCCGCCATCGGGCAGATCCAAGCCCATGATACGATCGTGGGGCCGGCAG 5438243 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 | || ||||| || |||| |||||| || || ||||| || || ||| || ||| Sbjct 5438244 ACGCCCGTGTAGACAGCAAGATTGGCCGGGGATCCGGAGTAAGGCTGCACATTAACGCCC 5438303 Query 127570 CA-TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || ||| | || | || |||||| | | | | || | ||| || ||||| || || Sbjct 5438304 CACTTCTCA-TCCTCCAGGTTGAACAGTTCGCGTCCGCGTTTCTGGGCGAGCAGCTCAAT 5438362 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTA 127658 ||||||||| ||||||| ||||| ||||| Sbjct 5438363 GCGATCGATGTACTCGTTGCCACCGTAGTA 5438392 >seq1 Length=23539531 Score = 174 bits (192), Expect = 2e-38 Identities = 904/1424 (63%), Gaps = 64/1424 (4%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||| || || || || || | ||| | || ||||||| |||||| |||| Sbjct 10004796 CAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCTGGCACTCGGAT 10004737 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || || || ||| | ||| |||||| || || | || Sbjct 10004736 GTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATCGCGCACGCGAT 10004677 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG---ACGGTGGC 97052 ||||||| || || ||| | || ||| | |||||||| ||||| | | |||||| Sbjct 10004676 CTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTG-- 10004619 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 | ||| || ||||||||| || || || ||||| ||| |||||||| || Sbjct 10004618 -ATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGTGGGGCGATGAA 10004560 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCA 97172 || || |||| | |||||||||||||| || | || || | || Sbjct 10004559 TTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTAAGGCT 10004500 Query 97173 CGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTC 97232 | | |||||| |||||| | ||| || || ||||| |||| ||||||||| ||| Sbjct 10004499 CAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTC 10004440 Query 97233 TACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCC 97292 | |||||| | || | || |||||||| | | | |||||||| ||| || | Sbjct 10004439 TTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCATTAAGTGCAGC 10004380 Query 97293 AATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTG 97352 || ||||||||||||| || || || |||| ||||| |||| ||||| ||| || Sbjct 10004379 AACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTG 10004320 Query 97353 GCATCGGTCAATCTGCCCAAGTTTGTAGAG--GGTAAAG-----TGTTT-----AATCTC 97400 || || || || || ||| || | || ||| || || || ||| Sbjct 10004319 GCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAGAAGACGTATGATTTCAAGAAGCTC 10004260 Query 97401 AACCTATTGGCAAAGACGGTGCGTCTGGTGACTAGGAATCTAAACAAGATTATCGACAAT 97460 || | | |||||| | || || | |||||||||||||| || || | | Sbjct 10004259 AAGGAAGTCACAAAGA---------TAGTTACCAAAAATCTAAACAAGATAATTGATA-T 10004210 Query 97461 GCACTCT-ATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCCATCGGTAT 97519 | | | |||| | || ||| ||||| || || | ||| || ||| | || || Sbjct 10004209 CAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCGTGGGCAT 10004150 Query 97520 AGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTACGAGGACTCGAT 97579 || | || || | ||| || || || | ||| || | | ||||| | ||| Sbjct 10004149 TGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGA--AAGCGAA 10004092 Query 97580 GCAG--------TTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACTGACGGAG 97631 | || ||||||| | || || ||||| || ||| ||| || || | Sbjct 10004091 GAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGGAAGCC 10004032 Query 97632 AGTTGCCAACTGGCC-AGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCCGACCAG 97690 || ||| |||||||| ||| | | || |||||| | ||| | || |||||| || Sbjct 10004031 AGCTGCGAACTGGCCCAGACCGAA-GGTCCATACGAAACCTACGAGGGCAGCCCGGTGAG 10003973 Query 97691 TCGTGGAGAGTTGCACTTCGACCGAT---ACTCGGTGCACAGCCAAAA-GTGTGACTGGT 97746 ||| ||||| | |||| | || ||||| || | || ||| |||||| Sbjct 10003972 CAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGC-CAACGAACCTGTGGGACTGGC 10003914 Query 97747 CATCGTTGCGCAAAGA---CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCAC 97803 ||| || || |||| | ||||| | | ||||| |||| || || | Sbjct 10003913 AGAAATTG---AAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCACTGCTCGTTGCTC 10003857 Query 97804 CGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCA 97863 | |||||||| || | || | || | | ||||| |||||| || || |||| || Sbjct 10003856 CCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGAGCCGTACA 10003797 Query 97864 CGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTGCACT 97923 | | ||||| ||| | || | ||| || || || || || |||| || | Sbjct 10003796 CCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATT 10003737 Query 97924 TGGTTCGAGACTTGGAACGG--CTCAATCTGTGGAACGATGACATGGCCCAGTTGATCAT 97981 || | || ||| | ||| | || | ||||| |||| |||||| | |||||| Sbjct 10003736 TGTTGCGCGACCT--AACCGAACTGGACTTGTGGGACGACGACATGAAGAACCAGATCAT 10003679 Query 97982 GTACAACAATGGGTCCATTCAAAACATT---ACCATCATCCCGGAAGAGTTGCGCAGAA- 98037 | | || || || |||||||||||| ||||| | ||| |||| |||| ||| Sbjct 10003678 ATCGAGCAGGGGATCGATTCAAAACATTGAGACCAT-ACCCCAGAAGG--TGCG-AGATC 10003623 Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 | |||||||| || ||||| || | |||| | ||| | ||||| ||||| | | Sbjct 10003622 TGTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTAAAATGGCCGCCGATCGTG 10003563 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | ||| || |||||||| |||||||| | | || |||||||| | ||| | Sbjct 10003562 GTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAACTATGGAA 10003503 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 ||||||| |||||||||||| | ||||| || || || || || |||||||||| Sbjct 10003502 AGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAAAACCGGAATGTACTATC 10003443 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 || | || ||| | || | |||||||| | || || ||| || Sbjct 10003442 TGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAAC 10003399 Score = 163 bits (180), Expect = 4e-35 Identities = 317/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||||||||| || |||||||| |||||||||||||| | || | |||| | | Sbjct 2846494 GGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCACC 2846435 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCT 70185 ||||| ||||| || |||| | || || ||| | || | || ||||| | Sbjct 2846434 TGCGACGATGACTACAGCGGCAAGGGAATCGACCAGCTGC-GCCAGGTGATCGACACCAT 2846376 Query 70186 CAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTTG 70243 || || || || |||| | | ||| | |||| | |||||||| || | || Sbjct 2846375 CAGGAATAACCCCTCAGACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACAT--- 2846319 Query 70244 CACCAA-ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGAT----- 70297 | | || ||||| || || ||||| ||||| ||||| ||||||||| | ||| Sbjct 2846318 CCCAAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCG 2846259 Query 70298 -GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 || | |||| ||| | || ||||| || |||||||||||||| || |||||||| Sbjct 2846258 CGGTGAGCTGTCGTGCCAGCTCTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTT 2846199 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||||| || ||| | || | || ||||||||||| || | || || ||||| | Sbjct 2846198 CAACATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCC 2846139 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 | ||| || || |||||||| ||||| | ||||| || | || ||| | ||||| | Sbjct 2846138 GGGCGACTTTGTTCACACCATGGGCGATACACACGTCTACCTCAACCACGTAGAGCCGCT 2846079 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 |||| |||||| || || ||| |||| |||||||||||| Sbjct 2846078 GAAGGAGCAACTGGAGCGCACACCGCGACCCTTTCCCAAGCTG 2846036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740988623374440