Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq9 104 2e-17
seq4 86.0 5e-12
>seq9
Length=20829647
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || |||||||| ||| ||| | | |||| ||
Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792546
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || || ||| | |||||||| || || || || ||||| || |||||
Sbjct 5792547 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792606
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| ||| ||| | || ||||||||| || || || ||||| ||||| ||
Sbjct 5792607 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 5792666
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366
|| |||||||| || || ||||||||||||||
Sbjct 5792667 CCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698
>seq4
Length=24153973
Score = 86.0 bits (94), Expect = 5e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || |||||||| || || || || |||||||||||| || | | |||||||
Sbjct 3789619 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789678
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| ||| ||||| ||| | |||| ||| || || || || ||||| || || || |
Sbjct 3789679 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3789738
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTAT-TTTCTACATCTAAGGTAATGGTTTT 15333
|| ||| ||| ||| | || ||||| || | || || || || || || ||||| ||
Sbjct 3789739 ATCTTGGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || ||||| || || || || ||||||
Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCATA 3789828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362145569284479
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |