Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 158 3e-33 seq4 116 9e-21 seq2 93.3 1e-13 >seq1 Length=23539531 Score = 158 bits (174), Expect = 3e-33 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| ||||||||||| || || | || ||||| || || || ||| Sbjct 10088912 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 10088853 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| ||||| ||||||||||| ||||||||||| ||||| Sbjct 10088852 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 10088793 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||||| ||||| ||||| || || || ||||| || || || || Sbjct 10088792 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 10088733 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || |||||||| |||| Sbjct 10088732 TTAACGAAGATCTGCATCTTGT 10088711 >seq4 Length=24153973 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || || || || || || | |||||||| ||||| || || Sbjct 3789631 GTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3789690 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 3789691 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 3789750 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || || ||||| | || || ||||| ||||| || || Sbjct 3789751 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTC 3789810 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 3789811 TTCACGAAGATCTGCAT 3789827 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104418 TTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG 104477 |||| || || || || | ||| ||||| || || ||||| || |||||||||||||| | Sbjct 3789930 TTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAG 3789989 Query 104478 CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAA 104537 | || ||||| || | ||| || || |||||||| || || || ||||| || || | Sbjct 3789990 CCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCA 3790049 Query 104538 GTGTTTTTACAAATATCTGCATTTTG 104563 || || ||||| |||||||||||| Sbjct 3790050 AGGTCTTCACAAAGATCTGCATTTTG 3790075 >seq2 Length=21544594 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 |||||| ||||| ||||| || || || ||| ||| |||| ||||| ||||| | || Sbjct 8575730 TGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGA 8575671 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 || |||| || ||||| |||||||| || || || || | || || ||||||||||| Sbjct 8575670 GGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAG 8575611 Query 268996 TCTATTAATAGATACTTATAT 269016 | | || || || ||||| || Sbjct 8575610 TGTTTTGATCGACACTTACAT 8575590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151286002287252