Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 3e-33
seq4 116 9e-21
seq2 93.3 1e-13
>seq1
Length=23539531
Score = 158 bits (174), Expect = 3e-33
Identities = 156/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| ||||||||||| || || | || ||||| || || || |||
Sbjct 10088912 GTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 10088853
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 10088852 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 10088793
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||| | ||||| ||||| ||||| || || || ||||| || || || ||
Sbjct 10088792 ACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 10088733
Query 104543 TTTACAAATATCTGCATTTTGT 104564
|| || || |||||||| ||||
Sbjct 10088732 TTAACGAAGATCTGCATCTTGT 10088711
>seq4
Length=24153973
Score = 116 bits (128), Expect = 9e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || || || || || || | |||||||| ||||| || ||
Sbjct 3789631 GTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCG 3789690
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || ||||| || |||||||||||||| || ||
Sbjct 3789691 GCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTC 3789750
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | ||| || || || ||||| | || || ||||| ||||| || ||
Sbjct 3789751 ACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTC 3789810
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 3789811 TTCACGAAGATCTGCAT 3789827
Score = 102 bits (112), Expect = 2e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 104418 TTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTG 104477
|||| || || || || | ||| ||||| || || ||||| || |||||||||||||| |
Sbjct 3789930 TTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTAG 3789989
Query 104478 CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAA 104537
| || ||||| || | ||| || || |||||||| || || || ||||| || || |
Sbjct 3789990 CCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTTTCCGGTCA 3790049
Query 104538 GTGTTTTTACAAATATCTGCATTTTG 104563
|| || ||||| ||||||||||||
Sbjct 3790050 AGGTCTTCACAAAGATCTGCATTTTG 3790075
>seq2
Length=21544594
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
|||||| ||||| ||||| || || || ||| ||| |||| ||||| ||||| | ||
Sbjct 8575730 TGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGA 8575671
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
|| |||| || ||||| |||||||| || || || || | || || |||||||||||
Sbjct 8575670 GGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAG 8575611
Query 268996 TCTATTAATAGATACTTATAT 269016
| | || || || ||||| ||
Sbjct 8575610 TGTTTTGATCGACACTTACAT 8575590
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151286002287252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |