Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1 127 2e-24 >seq1 Length=23539531 Score = 127 bits (140), Expect = 2e-24 Identities = 182/254 (72%), Gaps = 2/254 (1%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACC-TCTT 5297 |||||| ||||||||||| | |||||||| |||||||| |||| || ||| || Sbjct 10669211 TCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATCAC 10669152 Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | ||| || | | ||||| ||||| || | ||| || || | ||| || | ||| | Sbjct 10669151 CAGTTGC-GGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCA 10669093 Query 5358 CCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||||| || | | | || || || || || |||| |||||| || || || | Sbjct 10669092 CCTCAAAATCAACATCTGAGTGATTGAAGAGGACGACGCCGAGATTGCCGCGATAATCCT 10669033 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||||| || || |||||||| || || |||| || ||||| || ||||| ||||| | Sbjct 10669032 CGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCTAGCCCGGATCGTGGGG 10668973 Query 5478 CTATGCGTCCGTAG 5491 ||| |||||||||| Sbjct 10668972 CTACGCGTCCGTAG 10668959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447707757371280