Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq1 127 2e-24
>seq1
Length=23539531
Score = 127 bits (140), Expect = 2e-24
Identities = 182/254 (72%), Gaps = 2/254 (1%)
Strand=Plus/Minus
Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACC-TCTT 5297
|||||| ||||||||||| | |||||||| |||||||| |||| || ||| ||
Sbjct 10669211 TCCGGTGGAACCGAATCCTGCCTCGCCGCGCTCGGTGTCCTCCAGTTTGTCCACCATCAC 10669152
Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357
| ||| || | | ||||| ||||| || | ||| || || | ||| || | ||| |
Sbjct 10669151 CAGTTGC-GGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCATGCTTCA 10669093
Query 5358 CCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417
||||||| || | | | || || || || || |||| |||||| || || || |
Sbjct 10669092 CCTCAAAATCAACATCTGAGTGATTGAAGAGGACGACGCCGAGATTGCCGCGATAATCCT 10669033
Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477
|||||| || || |||||||| || || |||| || ||||| || ||||| ||||| |
Sbjct 10669032 CGTCGACCACACCGGCGCCCACATCAATGAAGTTCTTCACCGCTAGCCCGGATCGTGGGG 10668973
Query 5478 CTATGCGTCCGTAG 5491
||| ||||||||||
Sbjct 10668972 CTACGCGTCCGTAG 10668959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447707757371280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |