Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1 181 7e-41 >seq1 Length=23539531 Score = 181 bits (200), Expect = 7e-41 Identities = 360/529 (68%), Gaps = 17/529 (3%) Strand=Plus/Plus Query 25381 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGAT 25440 |||| |||||||||||| || | ||| || || ||||||||| |||||||| | Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094 Query 25441 CCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAA 25500 ||||||||||| | || |||| ||||| ||||| || ||||| | || || || | Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154 Query 25501 CGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACC 25560 | | || ||||||| ||||| || |||| ||||||||| |||||||| || | | Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214 Query 25561 CCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG------TCGCTCACG 25614 ||||||| | | |||||||||||||| ||||| ||||| || ||| ||| Sbjct 2846215 CCATGTCGGCGC-TTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACG 2846273 Query 25615 TAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTC 25674 |||||||| || | || |||||| || || || || | ||| || ||| Sbjct 2846274 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTC 2846333 Query 25675 CAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGATCCGCGGT 25730 || || ||| |||||||| | |||| ||||| | |||||| |||| | Sbjct 2846334 CAAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACC--- 2846390 Query 25731 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTG 25789 | ||||||| || | ||| | || |||||| | | || || | ||||| | Sbjct 2846391 -TGGCGCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CGTACTGCG 2846448 Query 25790 CTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCT 25849 | ||||||| |||||||||||| ||||||||||| || || || ||| | | | | | Sbjct 2846449 CCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCG 2846508 Query 25850 CAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898 || ||| |||| |||| || |||||||| | || | |||||||| Sbjct 2846509 TGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGAT 2846557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340106015991687