Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 7e-41
>seq1
Length=23539531
Score = 181 bits (200), Expect = 7e-41
Identities = 360/529 (68%), Gaps = 17/529 (3%)
Strand=Plus/Plus
Query 25381 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGAT 25440
|||| |||||||||||| || | ||| || || ||||||||| |||||||| |
Sbjct 2846035 TCAGCTTGGGAAAGGGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGT 2846094
Query 25441 CCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAA 25500
||||||||||| | || |||| ||||| ||||| || ||||| | || || || |
Sbjct 2846095 TGAGGTAGACGTGTGTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCA 2846154
Query 25501 CGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACC 25560
| | || ||||||| ||||| || |||| ||||||||| |||||||| || | |
Sbjct 2846155 CATGGGCAATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGC 2846214
Query 25561 CCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCG------TCGCTCACG 25614
||||||| | | |||||||||||||| ||||| ||||| || ||| |||
Sbjct 2846215 CCATGTCGGCGC-TTCTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACG 2846273
Query 25615 TAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTC 25674
|||||||| || | || |||||| || || || || | ||| || |||
Sbjct 2846274 TAAAACTGCGCCAAGCAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTC 2846333
Query 25675 CAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGATCCGCGGT 25730
|| || ||| |||||||| | |||| ||||| | |||||| |||| |
Sbjct 2846334 CAAGCCGACATGATGATGCGTCGGTCTGAGGGGTTATTCCTGATGGTGTCGATCACC--- 2846390
Query 25731 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTG 25789
| ||||||| || | ||| | || |||||| | | || || | ||||| |
Sbjct 2846391 -TGGCGCAGCTGGTCGATTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGC-CGTACTGCG 2846448
Query 25790 CTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCT 25849
| ||||||| |||||||||||| ||||||||||| || || || ||| | | | | |
Sbjct 2846449 CCCCGAAATGCCTCCACTGGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCG 2846508
Query 25850 CAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGAT 25898
|| ||| |||| |||| || |||||||| | || | ||||||||
Sbjct 2846509 TGAACCCCATCTTGTCCAGGAATTCTCTGGAGCTGTTCCCATCCCAGAT 2846557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340106015991687
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |