Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq9 111 1e-19
seq3570 102 7e-17
seq1 102 7e-17
seq4 86.0 5e-12
>seq9
Length=20829647
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| || ||||| || |||||| || |||||||| || | || | || || |||||||
Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG-CGTCCGTCCTC 5792545
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || |||| |||||||||||||| || | | |||||||||
Sbjct 5792546 CAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 5792605
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 5792606 GATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 5792665
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||||| ||||| || || ||||| |||||
Sbjct 5792666 GCCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | || || ||||| || |||||| || |||||||| || | |
Sbjct 5792241 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792300
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || |||||||||||||||| ||| || | || |||||||||||||| ||
Sbjct 5792301 AGAGTG-CGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 5792359
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||||| | | |||||||||| | |||
Sbjct 5792360 GATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAAC 5792419
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || || || ||||| ||||| || ||||||||
Sbjct 5792420 CTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
>seq3570
Length=216
Score = 102 bits (112), Expect = 7e-17
Identities = 150/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| || ||||| || |||||| || |||||||| || | || | || || |||||||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG-CGTCCGTCCTC 157
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || | || |||||||||||||| || | | |||||||||
Sbjct 156 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 97
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||||| | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 96 GATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTT 37
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| ||||| || ||||||||
Sbjct 36 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 7
>seq1
Length=23539531
Score = 102 bits (112), Expect = 7e-17
Identities = 164/233 (70%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || |||| | | ||| || || || || |||||| || |||||||| || |
Sbjct 4075143 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4075084
Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617
|| | || || | |||||||||||||| ||| || | || | |||||||||||| |
Sbjct 4075083 CAGAGTGCGGC-CATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4075025
Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677
| | | ||||| ||| || || ||||| | | | ||||| || | || ||||
Sbjct 4075024 GAATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4074965
Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||| | || ||||| || |||||||| |||||||| || |||||||| |||
Sbjct 4074964 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATAGTG 4074912
>seq4
Length=24153973
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || ||||| || |||||| || ||||||||||| | || || |||| ||
Sbjct 3789618 CACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3789677
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||| ||||| ||| || | || | |||||||||||| || | | ||||| |||
Sbjct 3789678 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 3789737
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||| | | | | ||||| || | | ||| ||| | || ||||| ||
Sbjct 3789738 AATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| ||||| || ||||||||
Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421212084061619
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |