Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2 123 1e-23 seq9 120 2e-22 seq4611 95.1 6e-15 >seq2 Length=21544594 Score = 123 bits (136), Expect = 1e-23 Identities = 81/90 (90%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||| ||||||| || |||||||||| |||||||||| |||||||||||||||||||| Sbjct 9981919 TAAAAAAAAATTAATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 9981860 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| |||||||||||||||||||| Sbjct 9981859 CGACGCTCTAACCAACTGAGCTAATGGGCC 9981830 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| | |||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 4863018 AAAAAATAAGGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGA 4862959 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||||| |||||||||||||||||||| ||| Sbjct 4862958 CGCTCTAACCAACTGAGCTAATGGGCCTTCG 4862928 Score = 122 bits (134), Expect = 5e-23 Identities = 91/106 (86%), Gaps = 5/106 (5%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 16201604 AAAAAATCA---TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 16201548 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTTT 11547 ||||| |||||||||||||||||||| | |||||| | | |||| Sbjct 16201547 GCTCTAACCAACTGAGCTAATGGGCCTTGGTGACGATGGAGCTTTT 16201502 Score = 120 bits (132), Expect = 2e-22 Identities = 84/95 (88%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| || |||||| | ||||||||||||| |||||||||| |||||||||||||||| Sbjct 9988418 AATAAAAAAAAAAGTTGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATT 9988359 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||| |||| |||||||||||||||| Sbjct 9988358 AGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 9988324 Score = 118 bits (130), Expect = 6e-22 Identities = 86/99 (87%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || || ||||| |||||| | || |||||||||| |||||||||| ||||||||||| Sbjct 9981089 TAAAGCATTAAAAAAAAAATTCAACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 9981148 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| ||||||||||||||| Sbjct 9981149 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 9981187 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 3048138 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3048079 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 3048078 TGAGCTAATGGGCC 3048065 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| Sbjct 9982205 GGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGG 9982146 Query 11528 CC 11529 || Sbjct 9982145 CC 9982144 Score = 91.5 bits (100), Expect = 8e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 9982278 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 9982219 Query 11516 TGAG 11519 |||| Sbjct 9982218 TGAG 9982215 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| ||||| |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 9982633 AAAAAATAATCATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 9982574 Query 11501 GACGCTCTRACCAACTG 11517 |||||||| |||| ||| Sbjct 9982573 GACGCTCTAACCAGCTG 9982557 >seq9 Length=20829647 Score = 120 bits (132), Expect = 2e-22 Identities = 85/97 (88%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||| | | |||||||||| |||||||||| |||||||||||||||||| Sbjct 19823146 TTAAGAAAAAAGGAGTTGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAG 19823205 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||| |||||||||||||||||||||| || Sbjct 19823206 CACGACGCTCTAACCAACTGAGCTAATGGGCCGTTGA 19823242 >seq4611 Length=630 Score = 95.1 bits (104), Expect = 6e-15 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 11469 GATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGC 11528 ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 630 GATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGC 571 Query 11529 C 11529 | Sbjct 570 C 570 Score = 93.3 bits (102), Expect = 2e-14 Identities = 77/94 (82%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||||||| || | |||||| | | ||||||||||| |||||||||| |||||| Sbjct 94 AAATATATAACAAGGAAAAAAGAATACCTTTGGCCCATGAGGGGATCGAACCCGCGACCT 35 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAG 11519 ||||||||||||||||||||||| |||| ||||| Sbjct 34 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAG 1 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261466918826044