Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq9 122 8e-23
seq1 122 8e-23
seq3570 120 3e-22
seq4 91.5 1e-13
>seq9
Length=20829647
Score = 122 bits (134), Expect = 8e-23
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||||| | || || ||||| || | ||| || ||| || ||||
Sbjct 5792253 CGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCG 5792312
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| |||||| | ||||| || | ||||||||||| || || || || |||
Sbjct 5792313 TCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTG 5792372
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||||||| ||| || || | | || || || | ||||||
Sbjct 5792373 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATG 5792432
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
|| || ||||| ||||| ||||| |||||||||||||
Sbjct 5792433 GTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATGC 5792469
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| |||||||| | || || ||||| || | ||| || ||| || ||||
Sbjct 5792481 CGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCG 5792540
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| |||||| | || || || | ||||||||||| || || || || |||
Sbjct 5792541 TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTG 5792600
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| | | || || | | ||||| || | ||||||
Sbjct 5792601 TCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATG 5792660
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || ||||| || || || || |||||
Sbjct 5792661 GTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695
>seq1
Length=23539531
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| || || ||||| || | ||| || ||| || |||| | ||||||
Sbjct 4075125 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 4075066
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| | ||||| | | ||||||||||| ||||| || || || || |
Sbjct 4075065 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 4075006
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | || || || | |||||||| ||
Sbjct 4075005 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 4074946
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || |||||||| |||||||||||
Sbjct 4074945 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||||| ||| || ||||| || | |||||| || | ||| | ||| ||
Sbjct 10088925 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 10088866
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || | ||||| | | ||||||||||||||||| ||||||||||| |
Sbjct 10088865 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 10088806
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || ||||| ||| ||| || | | ||||| |||| |||||||| ||
Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||||||||
Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
>seq3570
Length=216
Score = 120 bits (132), Expect = 3e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | || || ||||| || | ||| || ||| || |||| ||||||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| |||||| | ||||| || | ||||||||||| || || || || ||||| |
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||||||| | | || || | | ||||| || | |||||||| ||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
||||| ||||| ||||| |||||||||||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATGC 5
>seq4
Length=24153973
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839
|||||| | | || | ||||||||| | || || ||||| || | ||| ||||||
Sbjct 3789600 TCCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGA 3789659
Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899
|| ||| || ||||| || || ||| | ||||| | | ||||||||||| ||
Sbjct 3789660 CAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 3789719
Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959
|| || || || || | ||| || ||||| || | | ||||| | | || ||
Sbjct 3789720 GATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAAC 3789779
Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || ||||| ||||| ||||| |||||||||||
Sbjct 3789780 CTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448248505866840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |