Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq6230 163 4e-36
seq3864 109 9e-20
seq5 105 1e-18
>seq6230
Length=495
Score = 163 bits (180), Expect = 4e-36
Identities = 197/268 (74%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | || || |||||||||||||| ||||| ||||| |||||
Sbjct 330 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 271
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| ||| |||||||||| || || || ||||| | |||||| | | || || || |
Sbjct 270 CCGCCGTTTGGCTCGTCGAGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 211
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| ||| ||||| | ||| | ||| ||| || | |||||| || ||| |||||
Sbjct 210 GCGTGGCGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGA 151
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||| || | ||||| || || |||||||| | ||||| || |||| | |||||
Sbjct 150 ACACGCCAAGAGGAAGACAGTTACAGCCATGGATGTTGTCTACGCTCTGAAGAGGCAAGG 91
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | || || ||||| |||||
Sbjct 90 CCGCACCCTCTACGGATTTGGCGGTTAA 63
>seq3864
Length=3213
Score = 109 bits (120), Expect = 9e-20
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559
||||||||||||| || || ||||| | |||||| | | || || || | |||| ||
Sbjct 3132 TGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAACGCGTGGTG 3073
Query 16560 TTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTA 16619
|| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| |||||||
Sbjct 3072 TTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGAACACGCTA 3013
Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA 16679
| | |||||||| || |||||||| | || || || |||| | |||||||| |
Sbjct 3012 AGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGGCCGCACCC 2953
Query 16680 TTTATGGTTTTGGAAGTTAA 16699
| || || ||||| |||||
Sbjct 2952 TCTACGGATTTGGCGGTTAA 2933
>seq5
Length=27160941
Score = 105 bits (116), Expect = 1e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||| | ||||| ||||||||||| || ||||||||||| |||||
Sbjct 10758412 CGCCAAGCGTCATCGTAAGGTGCTTCGTGATAACATCCAGGGTATCACCAAGCCTGCTAT 10758353
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||||||||| || || || |||||| ||||||| ||| | || || || |
Sbjct 10758352 TCGCCGCTTGGCTCGTCGCGGCGGTGTTAAGCGTATCTCTGGCTTGATTTACGAGGAAAC 10758293
Query 16552 TCGTGATGTTTTGAAG 16567
||| | ||| |||||
Sbjct 10758292 TCGCGGTGTGCTGAAG 10758277
Score = 80.6 bits (88), Expect = 4e-11
Identities = 95/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630
||||| ||| |||||||| ||| ||| || ||| ||||||||||| || || |||||
Sbjct 10758209 TTCCTTGAGAACGTTATCCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACC 10758150
Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690
|| ||| ||||||| | |||||||| | || || || || || | | || || |||
Sbjct 10758149 GTGACCGCCATGGACGTGGTCTATGCTCTCAAGCGCCAGGGACGCACCCTCTACGGATTT 10758090
Query 16691 GGAAGTTAA 16699
|| |||||
Sbjct 10758089 GGCGGTTAA 10758081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068233894967
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |