Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6230 163 4e-36 seq3864 109 9e-20 seq5 105 1e-18 >seq6230 Length=495 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || || |||||||||||||| ||||| ||||| ||||| Sbjct 330 CGCCAAGCGTCATCGCAAAGTGCTGCGTGATAACATCCAAGGTATCACGAAGCCTGCTAT 271 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||| || || || ||||| | |||||| | | || || || | Sbjct 270 CCGCCGTTTGGCTCGTCGAGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAAC 211 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | ||| ||| || | |||||| || ||| ||||| Sbjct 210 GCGTGGCGTTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGA 151 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || || |||||||| | ||||| || |||| | ||||| Sbjct 150 ACACGCCAAGAGGAAGACAGTTACAGCCATGGATGTTGTCTACGCTCTGAAGAGGCAAGG 91 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || ||||| ||||| Sbjct 90 CCGCACCCTCTACGGATTTGGCGGTTAA 63 >seq3864 Length=3213 Score = 109 bits (120), Expect = 9e-20 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16500 TGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATG 16559 ||||||||||||| || || ||||| | |||||| | | || || || | |||| || Sbjct 3132 TGGCTCGTCGTGGCGGTGTGAAGCGCATATCTGGACTCATATACGAGGAAACGCGTGGTG 3073 Query 16560 TTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTA 16619 || ||||| | ||| | ||| ||| || | |||||| || ||| ||||| ||||||| Sbjct 3072 TTCTGAAGGTTTTCTTGGAGAACGTAATTCGTGATGCCGTCACCTACACCGAACACGCTA 3013 Query 16620 AACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGA 16679 | | |||||||| || |||||||| | || || || |||| | |||||||| | Sbjct 3012 AGAGAAAGACTGTTACAGCCATGGATGTTGTGTACGCTCTGAAGAGGCAAGGCCGCACCC 2953 Query 16680 TTTATGGTTTTGGAAGTTAA 16699 | || || ||||| ||||| Sbjct 2952 TCTACGGATTTGGCGGTTAA 2933 >seq5 Length=27160941 Score = 105 bits (116), Expect = 1e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | ||||| ||||||||||| || ||||||||||| ||||| Sbjct 10758412 CGCCAAGCGTCATCGTAAGGTGCTTCGTGATAACATCCAGGGTATCACCAAGCCTGCTAT 10758353 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||||||||| || || || |||||| ||||||| ||| | || || || | Sbjct 10758352 TCGCCGCTTGGCTCGTCGCGGCGGTGTTAAGCGTATCTCTGGCTTGATTTACGAGGAAAC 10758293 Query 16552 TCGTGATGTTTTGAAG 16567 ||| | ||| ||||| Sbjct 10758292 TCGCGGTGTGCTGAAG 10758277 Score = 80.6 bits (88), Expect = 4e-11 Identities = 95/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 ||||| ||| |||||||| ||| ||| || ||| ||||||||||| || || ||||| Sbjct 10758209 TTCCTTGAGAACGTTATCCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACC 10758150 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || ||| ||||||| | |||||||| | || || || || || | | || || ||| Sbjct 10758149 GTGACCGCCATGGACGTGGTCTATGCTCTCAAGCGCCAGGGACGCACCCTCTACGGATTT 10758090 Query 16691 GGAAGTTAA 16699 || ||||| Sbjct 10758089 GGCGGTTAA 10758081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068233894967