Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 253 5e-62 >seq1 Length=23539531 Score = 253 bits (280), Expect = 5e-62 Identities = 1109/1734 (64%), Gaps = 47/1734 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||||||| | ||||| || || || || |||||| | |||| | ||| Sbjct 10005165 GAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATCGAT 10005106 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || | ||||| ||||| ||||| | || ||||| || || |||| ||| Sbjct 10005105 GCAGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACACATGCATCGCCCACA 10005046 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||| || || ||| |||| || || || ||||| | |||| | Sbjct 10005045 CTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACG 10004986 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | ||| ||||||||||| || || | | | | | || || | || |||||| Sbjct 10004985 GCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGATCTCCAAGTCC 10004926 Query 363688 GCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || || || || || | | || | || |||||||| || || | ||| |||| Sbjct 10004925 GCCGGTGGCATCGGACTCAACG-TGCATTGCATTCGTGCAAAGGGCACCTCGATTTGCGG 10004867 Query 363747 CACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || |||| | |||||| ||||||||||||| | || ||| | ||| || Sbjct 10004866 CACAAATGG-TACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTTAATAATGTGGCTC 10004808 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || || || ||||| || || |||||| || || ||||| || ||||| || || Sbjct 10004807 GTTATGTGGATCAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCT 10004748 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | ||| | |||||||| || || || ||| |||||||| ||||| || | Sbjct 10004747 GGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATC 10004688 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | ||||| |||||||| || || || ||| | | || | || ||||| |||||||||| Sbjct 10004687 GCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGG 10004628 Query 363986 C---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 | ||| ||||||| ||| | ||||| ||| | ||||||||||| ||| || | Sbjct 10004627 CCAACGGT---GATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGT 10004571 Query 364043 GGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGA 364102 |||| || || | | || ||||| || || || ||||| ||| | Sbjct 10004570 GGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCAACCGAA 10004511 Query 364103 CAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACAC 364162 | || || || || |||||||||||||| || |||| | ||||| |||| | Sbjct 10004510 CGGTTAAGGCTCAATCCCTGTGGTTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATC 10004451 Query 364163 CCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAA 364222 | || ||| | | ||| || | |||||| | ||| |||||||||| | | || || | Sbjct 10004450 CGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCA 10004391 Query 364223 TTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCG 364282 || || |||||| | || || || || ||||||| || | || || |||| ||| | Sbjct 10004390 TTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCACCGGATGAGATTGCAG 10004331 Query 364283 TATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA-----AAGATGGTACTTTTGA 364337 | || ||| | || || ||||| || ||| || | ||| | || | ||| Sbjct 10004330 TCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCGGAGAAG--ACGTATGA 10004273 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGA 364397 | || | || | || || || | | ||| ||||| ||||| | || || Sbjct 10004272 TTTCAAGAAGCTCAAGGAAGTCACAAAGATAGTTACCAAAAATCTAAACAAGATAATTGA 10004213 Query 364398 CAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGG 364457 | ||||||||||| | || || || | || ||| || | ||||| || | || Sbjct 10004212 TATCAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCGTGGG 10004153 Query 364458 TCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATGGCATTTGATTC 364514 ||||| | ||||| ||||||| | | |||| |||| | | | | || Sbjct 10004152 CATTGGTATTCAGGGATTCGCTGATGCCT---TGATTCTCATGCGTTTCCCGTACGAAAG 10004096 Query 364515 GCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGAC 364574 || || || | | ||| || |||| |||||||| || || | || ||| || Sbjct 10004095 CGAAGAAGCCGGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGGA 10004036 Query 364575 TGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCT 364634 || || || |||| | ||| | || ||| || || ||||| ||| | Sbjct 10004035 AGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTACGAGGGCAGCCCGGT 10003976 Query 364635 TTCGCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCATCTGTCCGATGGAA 364691 | |||| || |||| || | ||| || || |||| | || ||| | Sbjct 10003975 GAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGT---GCCAACGAACCTGTGGGA 10003919 Query 364692 CTGGGATACGCT-ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAACTC---CCTCGT 364745 |||| | | | | | |||| |||||||||| ||| || ||||| ||||| Sbjct 10003918 CTGGCAGAAATTGAAGGAGTCCA---TTAAGAAGCACGGTGTCCGGAACTCACTGCTCGT 10003862 Query 364746 TACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGA 364805 | || ||||||||||| || ||||| || ||||| | || ||||| || | |||||| Sbjct 10003861 T---GCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGA 10003805 Query 364806 ACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAA 364865 |||| || | || | || | || || ||||| ||||| ||||| | ||| || || Sbjct 10003804 GCCGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAA 10003745 Query 364866 TAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTA 364925 | | | | || || |||| | | |||||| ||| |||||||||| | Sbjct 10003744 CCATCATTTGTTGCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAGAACCA 10003685 Query 364926 TATCATCGCCGCTAATGGTTCTGTGCAGAACATT-CCAGGAT-TTCCAGAAGATCTGAAG 364983 ||||| | | || || | || |||||| | || ||||||| | || Sbjct 10003684 GATCATATCGAGCAGGGGATCGATTCAAAACATTGAGACCATACCCCAGAAGGTGCGA-- 10003627 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTC-ATTGATATGGCGGCCGA 365042 | | ||||| || || |||||||| | || | | | | ||| | ||||| ||||| Sbjct 10003626 GATCTGTACAAGACGGTGTGGGAAATCT-CAGTCAAGTCCACGATTAAAATGGCCGCCGA 10003568 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTC 365102 ||| ||||| || || |||||| |||||||| ||| || || | |||||| || Sbjct 10003567 TCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAGCCAAACTA 10003508 Query 365103 CGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||||| || ||||| || || ||| |||||| | |||||||| || || Sbjct 10003507 TGGAAAGCTGACTTCCATACACTTTTACTCCTGGAAAGCAGGTCTTAAAACCGG 10003454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303226368658058