Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq9 185 6e-42
seq4 93.3 3e-14
seq1 87.8 1e-12
seq2511 86.0 4e-12
>seq9
Length=20829647
Score = 185 bits (204), Expect = 6e-42
Identities = 173/218 (79%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217
|| ||||| ||| | |||||||| || | |||| ||||| ||||| |||||||| ||
Sbjct 15043774 CAAGATGGCCACCGTAAACGTAAACCGCAGTGTGACGGACATCTTCTATCGCTACAAGAT 15043715
Query 6218 GCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275
||| || ||||| || ||||||||||| ||||||||||| || || ||||| | |||
Sbjct 15043714 GCCACG--TCTGCAGGCAAAGGTCGAGGGCAAGGGAAACGGCATCAAGACCGTGCTGGTC 15043657
Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTC 6335
|||||| | ||||| |||| ||| |||||||||| |||||||| || || || || ||
Sbjct 15043656 AACATGGCGGAAGTGGCTAGGGCCATCGGACGCCCGGCCACCTATCCAACCAAGTACTTT 15043597
Query 6336 GGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| ||||| || ||||| ||||||| ||||||||||||
Sbjct 15043596 GGTTGCGAGCTGGGCGCCCAGACGCTGTTTGATCACAA 15043559
Score = 111 bits (122), Expect = 1e-19
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433
|| |||||||| | || || ||||||||| | | || |||| ||||||| || | ||
Sbjct 15043493 AATGAGCGCTTTGTTGTGAATGGATCGCATGA-TGTGAACAAGTTGCAGGATTTGTTGGA 15043435
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493
|| |||||||||||||||||| | || | || ||||| || ||||||||| | | |
Sbjct 15043434 TGGTTTTATTCGCAAGTTTGTGTTATGCCCTGAGTGCGACAATCCGGAGACCAATTTGAC 15043375
Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553
|||||| |||| | | ||||| || ||| ||||| || ||||| | ||||||
Sbjct 15043374 TGTGTCAGCCAAAAACCAGACCATTTCGCAGTCTTGCAAGGCATGCGGCTTCCATGGTCT 15043315
Query 6554 GCTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601
||| | ||| | || ||| | ||||| ||||| ||||||| || ||
Sbjct 15043314 GCTCAAGGTTAAC-CATAAAGTGAACACATTCATTGTGAAGAACCCGCC 15043267
>seq4
Length=24153973
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | |||||| ||||| || |||||| || || |||||||| |||| ||| |
Sbjct 3789612 ACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3789671
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
||| || | ||| || ||||| || || || || || ||||| | ||||| || || ||
Sbjct 3789672 GTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 3789731
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| ||| || ||||||||||| | || || ||||| || || || ||
Sbjct 3789732 ATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3789791
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || || || | || |||||||| ||||||||
Sbjct 3789792 GGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
>seq1
Length=23539531
Score = 87.8 bits (96), Expect = 1e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || || | |||||| || |||||| |||||| ||||| || || |||||
Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || | || || | || || || || || || || || || ||||| | ||
Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268
| |||||||||||| ||| || || ||||| | || |||||| | || ||| |
Sbjct 10088823 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATC-CGACGGTTCGA 10088765
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
| || | || || || || ||||| | ||| || ||||| |||||||| || ||
Sbjct 10088764 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTA 10088710
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || || | |||||| || || || |||||| || || ||||| || |
Sbjct 4075144 TACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 4075085
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| | || | || || | || || ||||| || || || || || ||||| | ||
Sbjct 4075084 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4075025
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||| || || ||| || || ||| ||||||| || || || | || |
Sbjct 4075024 GAATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4074965
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || || | |||||||||||| ||||||||
Sbjct 4074964 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
>seq2511
Length=208
Score = 86.0 bits (94), Expect = 4e-12
Identities = 59/67 (88%), Gaps = 5/67 (7%)
Strand=Plus/Plus
Query 25930 TAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984
|||||||||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 63 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 122
Query 25985 ATGACGA 25991
|||||||
Sbjct 123 ATGACGA 129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334916097954389
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |