Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 185 6e-42 seq4 93.3 3e-14 seq1 87.8 1e-12 seq2511 86.0 4e-12 >seq9 Length=20829647 Score = 185 bits (204), Expect = 6e-42 Identities = 173/218 (79%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 || ||||| ||| | |||||||| || | |||| ||||| ||||| |||||||| || Sbjct 15043774 CAAGATGGCCACCGTAAACGTAAACCGCAGTGTGACGGACATCTTCTATCGCTACAAGAT 15043715 Query 6218 GCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTC 6275 ||| || ||||| || ||||||||||| ||||||||||| || || ||||| | ||| Sbjct 15043714 GCCACG--TCTGCAGGCAAAGGTCGAGGGCAAGGGAAACGGCATCAAGACCGTGCTGGTC 15043657 Query 6276 AACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTC 6335 |||||| | ||||| |||| ||| |||||||||| |||||||| || || || || || Sbjct 15043656 AACATGGCGGAAGTGGCTAGGGCCATCGGACGCCCGGCCACCTATCCAACCAAGTACTTT 15043597 Query 6336 GGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || ||||| || ||||| ||||||| |||||||||||| Sbjct 15043596 GGTTGCGAGCTGGGCGCCCAGACGCTGTTTGATCACAA 15043559 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 || |||||||| | || || ||||||||| | | || |||| ||||||| || | || Sbjct 15043493 AATGAGCGCTTTGTTGTGAATGGATCGCATGA-TGTGAACAAGTTGCAGGATTTGTTGGA 15043435 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 || |||||||||||||||||| | || | || ||||| || ||||||||| | | | Sbjct 15043434 TGGTTTTATTCGCAAGTTTGTGTTATGCCCTGAGTGCGACAATCCGGAGACCAATTTGAC 15043375 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 |||||| |||| | | ||||| || ||| ||||| || ||||| | |||||| Sbjct 15043374 TGTGTCAGCCAAAAACCAGACCATTTCGCAGTCTTGCAAGGCATGCGGCTTCCATGGTCT 15043315 Query 6554 GCTGGA-TTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCC 6601 ||| | ||| | || ||| | ||||| ||||| ||||||| || || Sbjct 15043314 GCTCAAGGTTAAC-CATAAAGTGAACACATTCATTGTGAAGAACCCGCC 15043267 >seq4 Length=24153973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | |||||| ||||| || |||||| || || |||||||| |||| ||| | Sbjct 3789612 ACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCC 3789671 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 ||| || | ||| || ||||| || || || || || ||||| | ||||| || || || Sbjct 3789672 GTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTT 3789731 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||| || ||||||||||| | || || ||||| || || || || Sbjct 3789732 ATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGAT 3789791 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || | || |||||||| |||||||| Sbjct 3789792 GGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 >seq1 Length=23539531 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || || | |||||| || |||||| |||||| ||||| || || ||||| Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || | || || || || || || || || || ||||| | || Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268 | |||||||||||| ||| || || ||||| | || |||||| | || ||| | Sbjct 10088823 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATC-CGACGGTTCGA 10088765 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || | || || || || ||||| | ||| || ||||| |||||||| || || Sbjct 10088764 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTA 10088710 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||||| || || || |||||| || || ||||| || | Sbjct 4075144 TACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 4075085 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| | || | || || | || || ||||| || || || || || ||||| | || Sbjct 4075084 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4075025 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| || || ||| || || ||| ||||||| || || || | || | Sbjct 4075024 GAATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4074965 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | |||||||||||| |||||||| Sbjct 4074964 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 >seq2511 Length=208 Score = 86.0 bits (94), Expect = 4e-12 Identities = 59/67 (88%), Gaps = 5/67 (7%) Strand=Plus/Plus Query 25930 TAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct 63 TAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 122 Query 25985 ATGACGA 25991 ||||||| Sbjct 123 ATGACGA 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334916097954389