Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1 315 9e-81
seq2 138 1e-27
>seq1
Length=23539531
Score = 315 bits (348), Expect = 9e-81
Identities = 1213/1888 (64%), Gaps = 38/1888 (2%)
Strand=Plus/Plus
Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959
||||| ||||| |||| |||||| || || || || || ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 62076
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 62077 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCT-GCCATAATCCTATT 62130
| ||||||| | ||| | || | ||||| ||||| || || | || ||| ||
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689
Query 62131 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62190
||| || || || | ||| || | ||||||| | | | | ||| | || ||
Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749
Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250
|| || ||||| || |||| |||| ||| ||||| || || |||| ||||| || |
Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809
Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | |
Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869
Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGAT 62369
|| | | ||||| |||| | | | || || | | ||| | ||| || |
Sbjct 10003870 TGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928
Query 62370 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62428
|| || || || | ||| || || || | | | |||
Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988
Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62488
| || || |||||||| ||||| ||| || ||||| || || || || || || ||
Sbjct 10003989 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047
Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGCGCTTCCAGGCTATCAAATGG 62547
|| ||||| ||||| || |||| || ||| | || | ||||| ||| || | ||
Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10004106
Query 62548 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607
|| | |||||| || || || || ||||| |||| |||||| || | || | |||
Sbjct 10004107 GAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATG 10004166
Query 62608 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667
||| ||| || | || ||||| | ||||||||||| ||||| || || || ||
Sbjct 10004167 CCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTT 10004226
Query 62668 GAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62726
|||||| || || || ||||| || ||||| || || |||||| | || | |
Sbjct 10004227 TAGATTTTTGGTAACTATCTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATA-CGTCT-T 10004283
Query 62727 CTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781
|| | || |||||||| | || | || |||| || || || || | |||||
Sbjct 10004284 CTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC 10004343
Query 62782 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841
| | ||||| | || || ||||| | || || ||||| ||||| |||| |||
Sbjct 10004344 CGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATT 10004403
Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901
|| || || ||||| |||| || || ||||| | || ||| | ||| | || || ||
Sbjct 10004404 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTC 10004463
Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 62961
| || | || || || || ||| | | | ||||||| | | ||| |
Sbjct 10004464 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CC 10004521
Query 62962 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019
| ||||| |||||| |||| |||||| || || ||||| || | ||
Sbjct 10004522 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGG 10004581
Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079
|| || ||||| | | || ||||| | |||||| || |||| ||| ||| ||||||
Sbjct 10004582 AGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10004641
Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139
|| |||||||| || ||||| || || ||| ||||| | | | || || || ||
Sbjct 10004642 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10004701
Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199
|| || ||||| || || || |||||| | | | ||| || ||||| ||||||| ||
Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761
Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259
||||| | | || || || ||| ||||||||||| | || | ||| ||||||
Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821
Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319
| || |||| ||| |||| | |||||||| |||||||| || || | || || |
Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881
Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377
|| | |||||||| | | | ||| || || || || || || || ||||| |
Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCA 10004939
Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437
|||||| ||| | | | | |||||||| || || || ||||| | || |
Sbjct 10004940 TGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAA 10004999
Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497
| ||||| |||| || | || | || | || ||| | || || || || |
Sbjct 10005000 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10005059
Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557
| || || | || || || ||||| || || || | |||| || |||||| |
Sbjct 10005060 GTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTC 10005119
Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617
||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| ||
Sbjct 10005120 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10005179
Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677
|| | || | || ||||| |||| || || || ||||||||||| || |||||
Sbjct 10005180 TTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGT 10005239
Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAG 63705
| || || || || || |||||| ||
Sbjct 10005240 CACGATCATAGATTATGGACGAGTTTAG 10005267
>seq2
Length=21544594
Score = 138 bits (152), Expect = 1e-27
Identities = 537/840 (64%), Gaps = 13/840 (2%)
Strand=Plus/Plus
Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420
|||||||| ||||| || |||| ||||||||||| || || || || || |
Sbjct 8575020 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC 8575079
Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480
||||| | |||||||| | ||||| || | || || || ||| || |||||
Sbjct 8575080 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 8575139
Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540
|| | ||| | || || || || || || || ||||| || || |||||
Sbjct 8575140 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATG 8575199
Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600
|| || | || || || || || | || || || || || ||||| | ||||||||
Sbjct 8575200 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCG 8575259
Query 32601 GTTATAATAGATCTTACTGTTTCT-TCACTC---GGTGGATACAATAAATGTTTAAACAT 32656
|| ||||| || | | || | | ||| | | || | || | |||||
Sbjct 8575260 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 8575315
Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716
|| || || |||||||| | |||||||| | | || | |||||||| || ||
Sbjct 8575316 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 8575375
Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776
| ||| ||||| || || ||||| |||||||| || ||||| || || || ||
Sbjct 8575376 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 8575435
Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGT 32832
||| || || || || || |||||||| || | | ||| || || ||| | |
Sbjct 8575436 GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGA 8575495
Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892
| | ||||| | ||||| || ||||| || ||| ||||| || || ||||
Sbjct 8575496 CGAG-ATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAG 8575554
Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952
| || || || || | | | | ||| | || || || ||||||| ||| |
Sbjct 8575555 CGTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGT 8575614
Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012
|||| ||||| || | ||| || ||||| || || || ||||||||||||| ||||| |
Sbjct 8575615 ACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCG 8575674
Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072
| ||||| || || || ||||| || | | || || || || || || ||| ||
Sbjct 8575675 TGATCTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGG 8575734
Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132
| ||||| || |||| || || || |||| ||||| | || | ||
Sbjct 8575735 CGGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCC 8575794
Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
| ||| | | || || || | |||||| || || || ||||| || || ||||| ||||
Sbjct 8575795 AGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633571654472400
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