Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 315 9e-81 seq2 138 1e-27 >seq1 Length=23539531 Score = 315 bits (348), Expect = 9e-81 Identities = 1213/1888 (64%), Gaps = 38/1888 (2%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| ||||| |||| |||||| || || || || || ||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 62076 |||||| || | | ||| || |||||||| | || || || | ||||| Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630 Query 62077 ATCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCT-GCCATAATCCTATT 62130 | ||||||| | ||| | || | ||||| ||||| || || | || ||| || Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCTCGATATGATCTGGTT 10003689 Query 62131 CTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAAC 62190 ||| || || || | ||| || | ||||||| | | | | ||| | || || Sbjct 10003690 CTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGAC 10003749 Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 || || ||||| || |||| |||| ||| ||||| || || |||| ||||| || | Sbjct 10003750 CACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAA 10003809 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || |||| || ||||| || |||||||| ||||| || || || | | Sbjct 10003810 GGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAG 10003869 Query 62311 ACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGAT 62369 || | | ||||| |||| | | | || || | | ||| | ||| || | Sbjct 10003870 TGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGT 10003928 Query 62370 CCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCT 62428 || || || || | ||| || || || | | | ||| Sbjct 10003929 TCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCT 10003988 Query 62429 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 62488 | || || |||||||| ||||| ||| || ||||| || || || || || || || Sbjct 10003989 -CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCA 10004047 Query 62489 TAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGCGCTTCCAGGCTATCAAATGG 62547 || ||||| ||||| || |||| || ||| | || | ||||| ||| || | || Sbjct 10004048 TAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACGG 10004106 Query 62548 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 || | |||||| || || || || ||||| |||| |||||| || | || | ||| Sbjct 10004107 GAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATG 10004166 Query 62608 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62667 ||| ||| || | || ||||| | ||||||||||| ||||| || || || || Sbjct 10004167 CCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTT 10004226 Query 62668 GAGATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62726 |||||| || || || ||||| || ||||| || || |||||| | || | | Sbjct 10004227 TAGATTTTTGGTAACTATCTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATA-CGTCT-T 10004283 Query 62727 CTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 || | || |||||||| | || | || |||| || || || || | ||||| Sbjct 10004284 CTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC 10004343 Query 62782 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 | | ||||| | || || ||||| | || || ||||| ||||| |||| ||| Sbjct 10004344 CGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATT 10004403 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 || || || ||||| |||| || || ||||| | || ||| | ||| | || || || Sbjct 10004404 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTC 10004463 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 62961 | || | || || || || ||| | | | ||||||| | | ||| | Sbjct 10004464 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CC 10004521 Query 62962 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 | ||||| |||||| |||| |||||| || || ||||| || | || Sbjct 10004522 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGG 10004581 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || ||||| | | || ||||| | |||||| || |||| ||| ||| |||||| Sbjct 10004582 AGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10004641 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || |||||||| || ||||| || || ||| ||||| | | | || || || || Sbjct 10004642 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10004701 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 || || ||||| || || || |||||| | | | ||| || ||||| ||||||| || Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | || || || ||| ||||||||||| | || | ||| |||||| Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 | || |||| ||| |||| | |||||||| |||||||| || || | || || | Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881 Query 63320 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTA 63377 || | |||||||| | | | ||| || || || || || || || ||||| | Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCA 10004939 Query 63378 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 63437 |||||| ||| | | | | |||||||| || || || ||||| | || | Sbjct 10004940 TGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAA 10004999 Query 63438 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63497 | ||||| |||| || | || | || | || ||| | || || || || | Sbjct 10005000 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10005059 Query 63498 GAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63557 | || || | || || || ||||| || || || | |||| || |||||| | Sbjct 10005060 GTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTC 10005119 Query 63558 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63617 ||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| || Sbjct 10005120 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10005179 Query 63618 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63677 || | || | || ||||| |||| || || || ||||||||||| || ||||| Sbjct 10005180 TTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGT 10005239 Query 63678 CTCGTTCGTAAATAATAACCGAGTTGAG 63705 | || || || || || |||||| || Sbjct 10005240 CACGATCATAGATTATGGACGAGTTTAG 10005267 >seq2 Length=21544594 Score = 138 bits (152), Expect = 1e-27 Identities = 537/840 (64%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 32361 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAAT 32420 |||||||| ||||| || |||| ||||||||||| || || || || || | Sbjct 8575020 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC 8575079 Query 32421 GATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAAT 32480 ||||| | |||||||| | ||||| || | || || || ||| || ||||| Sbjct 8575080 GATATCATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAAC 8575139 Query 32481 TCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATT 32540 || | ||| | || || || || || || || ||||| || || ||||| Sbjct 8575140 TCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATG 8575199 Query 32541 CCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCT 32600 || || | || || || || || | || || || || || ||||| | |||||||| Sbjct 8575200 CCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCG 8575259 Query 32601 GTTATAATAGATCTTACTGTTTCT-TCACTC---GGTGGATACAATAAATGTTTAAACAT 32656 || ||||| || | | || | | ||| | | || | || | ||||| Sbjct 8575260 CGGAT----GATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACAT 8575315 Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || || || |||||||| | |||||||| | | || | |||||||| || || Sbjct 8575316 CAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGT 8575375 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 32776 | ||| ||||| || || ||||| |||||||| || ||||| || || || || Sbjct 8575376 CAATCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA 8575435 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA----CCGGCGCTGT 32832 ||| || || || || || |||||||| || | | ||| || || ||| | | Sbjct 8575436 GAAGATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGA 8575495 Query 32833 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 32892 | | ||||| | ||||| || ||||| || ||| ||||| || || |||| Sbjct 8575496 CGAG-ATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAG 8575554 Query 32893 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 32952 | || || || || | | | | ||| | || || || ||||||| ||| | Sbjct 8575555 CGTTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGT 8575614 Query 32953 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGG 33012 |||| ||||| || | ||| || ||||| || || || ||||||||||||| ||||| | Sbjct 8575615 ACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCG 8575674 Query 33013 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 33072 | ||||| || || || ||||| || | | || || || || || || ||| || Sbjct 8575675 TGATCTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGG 8575734 Query 33073 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 33132 | ||||| || |||| || || || |||| ||||| | || | || Sbjct 8575735 CGGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCC 8575794 Query 33133 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 | ||| | | || || || | |||||| || || || ||||| || || ||||| |||| Sbjct 8575795 AGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633571654472400