Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 113 4e-20
seq1 91.5 1e-13
>seq2
Length=21544594
Score = 113 bits (124), Expect = 4e-20
Identities = 140/189 (74%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 51088 CAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATG 51147
|| || ||||| ||| || ||||| ||||||| ||||| | ||||| || | ||
Sbjct 4549694 CAGCCGACATAGCCGTTGGGGTCGCGTCCATCCAGACTGTACTTGTCGTTCAGCAGGATC 4549635
Query 51148 GCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTAC 51207
|| || |||| ||| || | | | |||||||||| ||| || ||||||||||||
Sbjct 4549634 GCGTACTCCAACGCCTGTTCCGGTGTCGCAGTCCATTCCAGAATCTTTTTGGCCCAGTAC 4549575
Query 51208 ATGCGCATGTAACCGTGCATCTTGCCCTCGCA-ACGAAGCTGCGCTTGAGCCGAGTTCCA 51266
||||||| | |||||||| || ||||||| |||| ||||| ||| |||||||||||
Sbjct 4549574 ATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACGA-GCTGCAGTTGCGCCGAGTTCCA 4549516
Query 51267 CAATTCGTC 51275
|| |||||
Sbjct 4549515 CAGGTCGTC 4549507
>seq1
Length=23539531
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || ||||
Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 10088776 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 10088831
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || ||||| || | ||||||| ||||| | || ||
Sbjct 10088832 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 10088891
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| || || || |||||
Sbjct 10088892 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 10088927
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433287762651485
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |