Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq1 91.5 1e-13 >seq2 Length=21544594 Score = 113 bits (124), Expect = 4e-20 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 51088 CAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATG 51147 || || ||||| ||| || ||||| ||||||| ||||| | ||||| || | || Sbjct 4549694 CAGCCGACATAGCCGTTGGGGTCGCGTCCATCCAGACTGTACTTGTCGTTCAGCAGGATC 4549635 Query 51148 GCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTAC 51207 || || |||| ||| || | | | |||||||||| ||| || |||||||||||| Sbjct 4549634 GCGTACTCCAACGCCTGTTCCGGTGTCGCAGTCCATTCCAGAATCTTTTTGGCCCAGTAC 4549575 Query 51208 ATGCGCATGTAACCGTGCATCTTGCCCTCGCA-ACGAAGCTGCGCTTGAGCCGAGTTCCA 51266 ||||||| | |||||||| || ||||||| |||| ||||| ||| ||||||||||| Sbjct 4549574 ATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACGA-GCTGCAGTTGCGCCGAGTTCCA 4549516 Query 51267 CAATTCGTC 51275 || ||||| Sbjct 4549515 CAGGTCGTC 4549507 >seq1 Length=23539531 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 10088776 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 10088831 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 10088832 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 10088891 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || || ||||| Sbjct 10088892 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 10088927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433287762651485