Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 250 3e-61
seq5 125 8e-24
>seq2
Length=21544594
Score = 250 bits (276), Expect = 3e-61
Identities = 553/824 (67%), Gaps = 8/824 (1%)
Strand=Plus/Plus
Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865
||||| ||| | || || ||||| || || || |||||||| |||| |||||| | |
Sbjct 8575032 TGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCC 8575091
Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923
| | | | ||| || |||| ||| || |||| || || |||||| | ||
Sbjct 8575092 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 8575151
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
| || ||||| || || |||||||| ||||||| || || ||||| || | | |
Sbjct 8575152 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG 8575211
Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043
|| || || || ||||| | ||| || | ||| || | || || || | ||| ||
Sbjct 8575212 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 8575271
Query 93044 ATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAG 93100
|| | | || |||| || || || | | | | |||| | ||||| |||||
Sbjct 8575272 ATGATGCGCTCGCGCTTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAG 8575328
Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160
||| || || || ||||| || || |||| ||| ||| ||| || || || || | |
Sbjct 8575329 TCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATC 8575388
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220
|| || || ||||| ||||| || || || || || || || || || || || |||
Sbjct 8575389 AGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCC 8575448
Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280
||||| ||||| || | || || || | ||||| || || || ||||||
Sbjct 8575449 ACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGAC 8575508
Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340
| ||||| || || || ||| | | || | |||||||||||||| || |||||
Sbjct 8575509 AGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTAC 8575568
Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400
||||||| || | ||| || ||||| || ||||| || | | ||||| || || ||
Sbjct 8575569 TCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGC 8575628
Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460
|| |||||||| || || ||||| |||||||| |||| || |||||||||||||| ||
Sbjct 8575629 ACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCC 8575688
Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520
||| |||| ||| || || || || || || || ||||| || || ||||| || |||
Sbjct 8575689 TGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCC 8575748
Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580
| | ||| || ||||| ||| || || || || | ||| || | || ||
Sbjct 8575749 AGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCC 8575808
Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| || | ||| || || ||||| ||||| || || || || ||
Sbjct 8575809 TTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 8575852
>seq5
Length=27160941
Score = 125 bits (138), Expect = 8e-24
Identities = 81/88 (92%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320
|||||||||||||||||| |||||||||||||||||||||| |||||||| | ||||
Sbjct 19622987 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGA 19623046
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||||
Sbjct 19623047 GCGTGGGTTCGAACCCCACACCTGACAA 19623074
Score = 109 bits (120), Expect = 6e-19
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 4876472 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 4876531
Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||| ||||
Sbjct 4876532 GTGGGTTCGAACCCCACACCTGGCAAA 4876558
Score = 109 bits (120), Expect = 6e-19
Identities = 77/87 (89%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||| ||||||||||||| |||||||||||||||||||||| |||||||| | | |||
Sbjct 19475851 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 19475910
Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||| |||
Sbjct 19475911 CGTGGGTTCGAACCCCACACCTGGCAA 19475937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556807765969560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |