Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 318 5e-82 seq9 113 4e-20 seq671 102 7e-17 seq4 89.7 4e-13 seq3570 84.2 2e-11 >seq1 Length=23539531 Score = 318 bits (352), Expect = 5e-82 Identities = 1019/1565 (65%), Gaps = 28/1565 (2%) Strand=Plus/Plus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||||| |||||| || | ||| || | ||| || ||||||||||||| ||||||||| || Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| | ||| |||||| | || | ||| || | |||| | | | ||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | || | || || || || ||||| ||||| || || | || |||||||| || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| |||| || ||| |||||||||||||| ||||| || |||| ||| | Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTT 10003635 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076 | ||||| |||||||| || | || | || || | | || || | ||| || Sbjct 10003636 CTGGGGTATGGTCTCAATGTTTTGAATCGAT-CCCCTGCTCGATATGATCTGGTTCTTCA 10003694 Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTT 129136 | | |||| |||| | ||||| | | | ||| ||| | | ||| | || | Sbjct 10003695 TGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCT 10003754 Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196 | || || || | || ||| ||||| ||| ||||| ||||| ||||||| || |||| Sbjct 10003755 GGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATT 10003814 Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256 |||||||||| | ||| ||||| || | || ||||||||| ||| ||| || |||| Sbjct 10003815 CATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGT 10003874 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGG 129316 | || | |||||||| |||||| | || |||| ||||||||||| || | Sbjct 10003875 TCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTG 10003934 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGG 129376 | | | ||||| |||||| ||||| || || || | || ||| ||||| Sbjct 10003935 GCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 10003994 Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 |||| || | | | |||| |||||| || |||||||| |||||| | |||| Sbjct 10003995 TTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAA 10004054 Query 129437 TTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACG 129494 | ||||| ||| | || || ||||| | ||| | |||||||||||||| | ||| Sbjct 10004055 TCGTTTC--AAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACG 10004112 Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554 || | || | || || || || |||||||| | || | ||| ||||| | Sbjct 10004113 CATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAA 10004172 Query 129555 ATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT 129614 |||||| || |||| || ||||| || ||||| || || || ||||||| ||| Sbjct 10004173 ATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATT 10004232 Query 129615 CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGAT 129674 ||| || || || || || | || | | | | |||| || || || | || Sbjct 10004233 TTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATA--CGTCTTCTCCGGC 10004290 Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734 || ||| || |||| || |||||||| |||||||| ||| | || | || Sbjct 10004291 GT-GACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTC-ATCCGGTG 10004348 Query 129735 A-CTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTT 129793 | || || || ||||| | |||||| || || ||||||||||| | || || | Sbjct 10004349 AGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCT 10004408 Query 129794 GATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTT 129853 | || || ||| |||||||||| || ||| | | ||||||||| | || || || |||| Sbjct 10004409 GGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTT 10004468 Query 129854 GCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCC-- 129911 ||| || | |||| ||| | | ||||||| | | || || ||| Sbjct 10004469 GCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTC-----GGTTGGCCCG 10004523 Query 129912 AC---ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAG 129968 || || ||||||| | | ||||| | ||| ||||| ||| || || ||| Sbjct 10004524 ACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAG 10004583 Query 129969 CAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCAT 130028 || | | | || ||||| | ||| || | || || || |||||||| Sbjct 10004584 ACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCAT 10004643 Query 130029 AAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTCGGCA 130086 || | |||||||| |||||||||||| |||| ||| | |||| |||| | || | Sbjct 10004644 GAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG-- 10004701 Query 130087 CCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAA 130146 ||| |||| |||||||| ||||| || | | || | |||||| ||||| | |||| Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761 Query 130147 ATTGCCATTGCGCCCTTCCGTTTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGTTG 130203 || || | || || || ||||| ||| || || || | || | |||| || Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821 Query 130204 TAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTG 130263 |||| | || ||| | |||| || |||| || || ||||||| ||| | || Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881 Query 130264 CCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAAC 130323 || || |||| | ||| ||| | || || ||||| ||| | | || || |||| Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATG 10004941 Query 130324 GCGCA 130328 ||||| Sbjct 10004942 GCGCA 10004946 >seq9 Length=20829647 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| ||||| ||| | ||||| || || |||| | || || || | Sbjct 5792698 AATATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCA 5792639 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | || || |||| || || || ||||||||||| || || || ||| Sbjct 5792638 TCCGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 5792579 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || ||||| || ||| | ||||| ||||| | ||||| ||| Sbjct 5792578 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTAC 5792519 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | || || || |||| |||| || || Sbjct 5792518 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGG 5792469 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||| | || || || | || Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 5792408 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 5792407 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792348 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | ||||| ||||| | ||||| |||||| Sbjct 5792347 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792288 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || || |||| ||||||| || Sbjct 5792287 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGG 5792241 >seq671 Length=216 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| || ||||| || | | || ||| | || || | || Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||| | || || |||||||| || || || || ||| | || Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| | || |||| || ||| Sbjct 34 TTGGTTCTCCGTCTGCGTGGTGGT 11 >seq4 Length=24153973 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || ||||| | || || || | | Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || ||||| || |||||||| || || || ||||| Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| || | || || |||||| | |||||||||||| Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || || || | || | || ||||| Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGAGG 3789601 >seq3570 Length=216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || |||| | || || || | || Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 66 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 67 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | ||||| ||||| | ||||| |||||| Sbjct 127 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 186 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || || || ||| | || || || Sbjct 187 ATCCAGAAGGAGTCGACCCTTCACTTGGT 215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419689025500735