Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1 318 5e-82
seq9 113 4e-20
seq671 102 7e-17
seq4 89.7 4e-13
seq3570 84.2 2e-11
>seq1
Length=23539531
Score = 318 bits (352), Expect = 5e-82
Identities = 1019/1565 (65%), Gaps = 28/1565 (2%)
Strand=Plus/Plus
Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837
||||| |||||| || | ||| || | ||| || ||||||||||||| ||||||||| ||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897
||||| | ||| |||||| | || | ||| || | |||| | | | ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957
| || | || || || || ||||| ||||| || || | || |||||||| ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017
||| |||| || ||| |||||||||||||| ||||| || |||| ||| |
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGCACCTT 10003635
Query 129018 TTTTGGTATTTCTTCAATGTTCTGCA-CGCTGCCGTTGTTTGCAATAATTTTGTTTCGCA 129076
| ||||| |||||||| || | || | || || | | || || | ||| ||
Sbjct 10003636 CTGGGGTATGGTCTCAATGTTTTGAATCGAT-CCCCTGCTCGATATGATCTGGTTCTTCA 10003694
Query 129077 TCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTT 129136
| | |||| |||| | ||||| | | | ||| ||| | | ||| | || |
Sbjct 10003695 TGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCT 10003754
Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196
| || || || | || ||| ||||| ||| ||||| ||||| ||||||| || ||||
Sbjct 10003755 GGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATT 10003814
Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256
|||||||||| | ||| ||||| || | || ||||||||| ||| ||| || ||||
Sbjct 10003815 CATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGT 10003874
Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGG 129316
| || | |||||||| |||||| | || |||| ||||||||||| || |
Sbjct 10003875 TCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTG 10003934
Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGG 129376
| | | ||||| |||||| ||||| || || || | || ||| |||||
Sbjct 10003935 GCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 10003994
Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436
|||| || | | | |||| |||||| || |||||||| |||||| | ||||
Sbjct 10003995 TTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAA 10004054
Query 129437 TTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACG 129494
| ||||| ||| | || || ||||| | ||| | |||||||||||||| | |||
Sbjct 10004055 TCGTTTC--AAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACG 10004112
Query 129495 CAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCT 129554
|| | || | || || || || |||||||| | || | ||| ||||| |
Sbjct 10004113 CATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAA 10004172
Query 129555 ATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT 129614
|||||| || |||| || ||||| || ||||| || || || ||||||| |||
Sbjct 10004173 ATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATT 10004232
Query 129615 CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGAT 129674
||| || || || || || | || | | | | |||| || || || | ||
Sbjct 10004233 TTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATA--CGTCTTCTCCGGC 10004290
Query 129675 GTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC 129734
|| ||| || |||| || |||||||| |||||||| ||| | || | ||
Sbjct 10004291 GT-GACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTC-ATCCGGTG 10004348
Query 129735 A-CTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTT 129793
| || || || ||||| | |||||| || || ||||||||||| | || || |
Sbjct 10004349 AGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCT 10004408
Query 129794 GATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTT 129853
| || || ||| |||||||||| || ||| | | ||||||||| | || || || ||||
Sbjct 10004409 GGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTT 10004468
Query 129854 GCGTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTCTTACAAATTTGCC-- 129911
||| || | |||| ||| | | ||||||| | | || || |||
Sbjct 10004469 GCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTC-----GGTTGGCCCG 10004523
Query 129912 AC---ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAG 129968
|| || ||||||| | | ||||| | ||| ||||| ||| || || |||
Sbjct 10004524 ACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAG 10004583
Query 129969 CAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCAT 130028
|| | | | || ||||| | ||| || | || || || ||||||||
Sbjct 10004584 ACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTCAT 10004643
Query 130029 AAACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTCGGCA 130086
|| | |||||||| |||||||||||| |||| ||| | |||| |||| | || |
Sbjct 10004644 GAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG-- 10004701
Query 130087 CCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAA 130146
||| |||| |||||||| ||||| || | | || | |||||| ||||| | ||||
Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761
Query 130147 ATTGCCATTGCGCCCTTCCGTTTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGTTG 130203
|| || | || || || ||||| ||| || || || | || | |||| ||
Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821
Query 130204 TAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTG 130263
|||| | || ||| | |||| || |||| || || ||||||| ||| | ||
Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881
Query 130264 CCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAAC 130323
|| || |||| | ||| ||| | || || ||||| ||| | | || || ||||
Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTGAGTCCGATGCCACCGGCGGACTTGGAGATCATG 10004941
Query 130324 GCGCA 130328
|||||
Sbjct 10004942 GCGCA 10004946
>seq9
Length=20829647
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||||||||| ||||| ||| | ||||| || || |||| | || || || |
Sbjct 5792698 AATATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCA 5792639
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
|||||||| | || || |||| || || || ||||||||||| || || || |||
Sbjct 5792638 TCCGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 5792579
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || ||| | || || ||||| || ||| | ||||| ||||| | ||||| |||
Sbjct 5792578 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTAC 5792519
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || || || ||| | || || || |||| |||| || ||
Sbjct 5792518 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGG 5792469
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || || || ||||| | || || || | ||
Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 5792408
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | |||| || || || ||||||||||| || || || |||||
Sbjct 5792407 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792348
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || ||||| || ||| | ||||| ||||| | ||||| ||||||
Sbjct 5792347 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792288
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || ||| | || || || |||| ||||||| ||
Sbjct 5792287 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGG 5792241
>seq671
Length=216
Score = 102 bits (112), Expect = 7e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| || || |||| || ||||| || | | || ||| | || || | ||
Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || |||||||||||||| ||||| || ||||| || ||||| || || ||||||||
Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||||| | || || |||||||| || || || || ||| | ||
Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||| | || |||| || |||
Sbjct 34 TTGGTTCTCCGTCTGCGTGGTGGT 11
>seq4
Length=24153973
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || || || ||||| | || || || | |
Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || | || || ||||| || |||||||| || || || |||||
Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || || |||||||| || | || || |||||| | ||||||||||||
Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || || ||| | || || || | || | || |||||
Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGTCTCCGTGGAGG 3789601
>seq3570
Length=216
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | || || || || |||| | || || || | ||
Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 66
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | |||| || || || ||||||||||| || || || |||||
Sbjct 67 GATACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 126
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||| | || || ||||| || ||| | ||||| ||||| | ||||| ||||||
Sbjct 127 CAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 186
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427
|| || || || || ||| | || || ||
Sbjct 187 ATCCAGAAGGAGTCGACCCTTCACTTGGT 215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419689025500735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |