Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq9 95.1 3e-16 >seq9 Length=20829647 Score = 95.1 bits (104), Expect = 3e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| ||| |||||||| | |||| ||| || || |||||||||||||| || Sbjct 6482918 CCCATGGCGCGGGTCTTTCCGAAGGTCACCAAATGCACGTTCCACAAATACGGTCCATCC 6482977 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | | | |||| || || ||| | || || |||| | |||||||| ||| Sbjct 6482978 GGCAGTGTGCAGACCCACGACGGTCTGTGCGTGCTTCCCCTGAACATTGTCAACGAAAAG 6483037 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 6483038 ATCTACGTGTTCCTGTGGTTCTGGTTC 6483064 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||||| || || || ||| | || |||| ||||||||| Sbjct 6458277 TGCACCTTCCACAAGTATGGTCCCTCCGGTTCGCTGCAGAAGCACGACTCCCTCTGCATC 6458218 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| ||| | || |||||||||| ||| ||||| ||||||||||||||| Sbjct 6458217 CTGCCGCTAAACATCGTGAACGAGAAGACGTACGTTTTCATCTGGTTCTGGTTCT 6458163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478960006500