Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
seq9 86.0 5e-12
seq4 82.4 6e-11
>seq1
Length=23539531
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | || || || | || || || || |||||||| || ||
Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
| || || |||||| || || || |||||| |||| |||||||| || || |||||
Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||||||||| |||||| ||| | | ||| | || || | | ||||||
Sbjct 10088823 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGAC 10088764
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || ||||| || || || || || || ||||||||
Sbjct 10088763 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
>seq9
Length=20829647
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | || || || || | || || || || || |||||||| |||
Sbjct 5792466 ATGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCG 5792525
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| ||| || || || || || || || ||| | || | |||||| || || ||
Sbjct 5792526 GACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGG 5792585
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| ||||| || | | |||| ||| |||| | |||
Sbjct 5792586 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCG 5792645
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || |||||||||||||| || || ||||| |||||
Sbjct 5792646 ACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695
>seq4
Length=24153973
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | | || || || | || || || || || ||||||||||||
Sbjct 3789598 ATTCCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCG 3789657
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||||| ||||| || || ||| |||| |||||||| || || ||
Sbjct 3789658 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 3789717
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || || || |||||| || | | |||| |||||| | | ||
Sbjct 3789718 GGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCA 3789777
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | || ||||| || ||||| || || || ||||||||
Sbjct 3789778 ACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420095387763828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |