Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 334 1e-86
seq1 280 3e-70
>seq2
Length=21544594
Score = 334 bits (370), Expect = 1e-86
Identities = 575/821 (70%), Gaps = 23/821 (3%)
Strand=Plus/Minus
Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394
|||||||| ||||||| | || || |||||||| | | |||| ||| | ||||
Sbjct 8575838 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGCCTGA 8575783
Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450
| |||| || |||| || || | ||||||||||| ||||||||||| ||||
Sbjct 8575782 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGGCA 8575723
Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510
| || || |||||||||| | |||| | ||||||||| | ||||| || |
Sbjct 8575722 TCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCACGAT 8575663
Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570
||||||||||||||||||| ||||| |||||||||||||| ||| ||||| ||
Sbjct 8575662 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTTTTGA 8575603
Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630
|| |||| ||||||| |||||| | |||| | |||||||| || || || ||||
Sbjct 8575602 TCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAACGA 8575543
Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGAC- 42686
|||| ||| | ||| ||||| |||||||| || ||||||| |||| | |
Sbjct 8575542 TGCCGGCTG--TGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC--TCGTCCAAGTCG 8575487
Query 42687 GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGC 42746
|| | ||||| ||| | | | |||||| ||||||| ||||||||||||||| |||
Sbjct 8575486 GCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGC 8575427
Query 42747 GCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTC 42805
|||||||||||| |||||||| ||| || ||| | |||||| ||| | ||||||||
Sbjct 8575426 AGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCT-GATGCCTGGATTGACCTTCTC 8575368
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
||||| || ||| | |||||||| |||| | ||||||||| || |||||
Sbjct 8575367 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCA 8575308
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925
| ||||| ||| ||| | ||||| || | |||||| || || ||
Sbjct 8575307 G---CACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGT 8575251
Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCA 42985
|| || ||| ||||||||||||| | | |||||||| || |||||||||||
Sbjct 8575250 GGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTG 8575191
Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTC 43044
|||||| |||| | ||||||| ||| ||| || |||| | | || ||| || ||||
Sbjct 8575190 CGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCG 8575132
Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104
| | |||||||||| ||| || |||| ||||||| || ||| |||| |
Sbjct 8575131 TTGGAAAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATG 8575072
Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
| ||||||||||||||||| ||| || || || ||||||
Sbjct 8575071 GAAAGACCAACTTTTTCGAAAAGAAGGTGGCGGAGTACCAG 8575031
>seq1
Length=23539531
Score = 280 bits (310), Expect = 3e-70
Identities = 940/1446 (65%), Gaps = 54/1446 (4%)
Strand=Plus/Plus
Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794
|||| ||||||| | || | || | || | |||||| | ||| |||||||| ||||| |
Sbjct 10003402 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 10003460
Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854
| || || ||||| || | ||| |||| |||||||| | ||| || ||||
Sbjct 10003461 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-TCCAT----AG-TTTG 10003514
Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914
| ||| || | | | ||||| ||||| ||||| || | ||| | | || |
Sbjct 10003515 GCTCGGCCAC------ATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 10003568
Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972
| |||||||| | || | ||| ||||||| || || || ||||||||| | |
Sbjct 10003569 CGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACAC--CGTCTTGTACA-GAT 10003625
Query 243973 CTTG-AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030
|| | | | || ||| | || ||||| || | ||| ||| || | || |||| |
Sbjct 10003626 CTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGAT-ATGATC 10003684
Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCG-ACCAGGTGCC 244088
||| | ||||| |||| ||||| | ||| || | || | | || | || ||
Sbjct 10003685 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTT-AG-GTCGCGCAACAAATGAT 10003742
Query 244089 TGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148
||| |||||||| || || || ||||| || || || ||| | ||| || || ||
Sbjct 10003743 GGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACG 10003802
Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208
|||||| | || ||||||||| |||||| || || ||||| |||||||| | |
Sbjct 10003803 GCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAA 10003862
Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTC 244266
| ||||| ||||| || |||||| ||| ||| || || | | | | ||||||
Sbjct 10003863 CGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATG--GACTCCTTCAATTTCTGCCAGTC 10003920
Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326
||||| | || | ||| | |||||||||| |||||| | || ||
Sbjct 10003921 CCACAGGTTCGTTGGCACCTTGT---------CCCACATGTCGTACTGCAAAATTCCTTT 10003971
Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386
||| || ||||||||||||||||| ||| ||||| ||| ||||||||| | |||||
Sbjct 10003972 GCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCT 10004031
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446
| || | |||| | ||||| || || || || ||| || |||| | | ||| |
Sbjct 10004032 GGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTC 10004091
Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506
||| | | |||| | ||| | || ||| | || || | |||||| | || ||
Sbjct 10004092 TTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAAT 10004151
Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566
||| | ||| | || | | ||||| | | || || |||| || ||| | |||
Sbjct 10004152 GCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGAT 10004211
Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626
|| || | |||||| || || ||| | || ||| || ||| || ||
Sbjct 10004212 ATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAA 10004271
Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686
|| ||| | || ||||| | || ||| ||||||||||| |
Sbjct 10004272 ATCATACGTCT-----TCTCCGGCG----------TGACGAACATGTTGAGGGCGATGGA 10004316
Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746
||||| ||||||||| || | ||| |||| || || | || || || ||||| |
Sbjct 10004317 GGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAA 10004376
Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806
||| |||||||| |||||||| | | ||| || ||| ||| |||||| ||||||||
Sbjct 10004377 GTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 10004436
Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866
| |||||||| | || |||||||| | || || | | || | ||| |||
Sbjct 10004437 GAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGA 10004496
Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926
|||||| ||||| | | ||| |||||| |||||| |||||| ||
Sbjct 10004497 TTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTC 10004556
Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986
||| || |||||| || |||| || || || ||| ||||||||||| |||
Sbjct 10004557 GAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCA 10004616
Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046
|| ||| | ||| || | | ||||||||| ||||| ||||| ||||| | || ||
Sbjct 10004617 ATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAG 10004676
Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106
|| | | | | ||| || ||| ||||||||| |||| |||| || ||||||||
Sbjct 10004677 ATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGAC 10004736
Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166
|| ||||||||| |||| || | || | ||| ||||| |||||| |||||||||
Sbjct 10004737 ATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTG 10004796
Query 245167 GTCCAC 245172
|||||
Sbjct 10004797 ATCCAC 10004802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944249263495440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |