Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 334 1e-86 seq1 280 3e-70 >seq2 Length=21544594 Score = 334 bits (370), Expect = 1e-86 Identities = 575/821 (70%), Gaps = 23/821 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||||| | || || |||||||| | | |||| ||| | |||| Sbjct 8575838 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGCCTGA 8575783 Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || |||| || || | ||||||||||| ||||||||||| |||| Sbjct 8575782 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCTGATGGCA 8575723 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || |||||||||| | |||| | ||||||||| | ||||| || | Sbjct 8575722 TCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCACGGAGGCACGAT 8575663 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| ||||| |||||||||||||| ||| ||||| || Sbjct 8575662 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTTTTGA 8575603 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| || || || |||| Sbjct 8575602 TCGACACTTACATCCGGGATCCACACCAGCGAGAGTACCTGTTCAACGCTATCGAAACGA 8575543 Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGAC- 42686 |||| ||| | ||| ||||| |||||||| || ||||||| |||| | | Sbjct 8575542 TGCCGGCTG--TGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC--TCGTCCAAGTCG 8575487 Query 42687 GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGC 42746 || | ||||| ||| | | | |||||| ||||||| ||||||||||||||| ||| Sbjct 8575486 GCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGC 8575427 Query 42747 GCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||||||||||| |||||||| ||| || ||| | |||||| ||| | |||||||| Sbjct 8575426 AGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCT-GATGCCTGGATTGACCTTCTC 8575368 Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 ||||| || ||| | |||||||| |||| | ||||||||| || ||||| Sbjct 8575367 CAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCA 8575308 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925 | ||||| ||| ||| | ||||| || | |||||| || || || Sbjct 8575307 G---CACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGAGATCATCCGCGACGCGGT 8575251 Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCA 42985 || || ||| ||||||||||||| | | |||||||| || ||||||||||| Sbjct 8575250 GGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTG 8575191 Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTC 43044 |||||| |||| | ||||||| ||| ||| || |||| | | || ||| || |||| Sbjct 8575190 CGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTG-GAGTTGGGCG 8575132 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 | | |||||||||| ||| || |||| ||||||| || ||| |||| | Sbjct 8575131 TTGGAAAGATCTACAACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATG 8575072 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | ||||||||||||||||| ||| || || || |||||| Sbjct 8575071 GAAAGACCAACTTTTTCGAAAAGAAGGTGGCGGAGTACCAG 8575031 >seq1 Length=23539531 Score = 280 bits (310), Expect = 3e-70 Identities = 940/1446 (65%), Gaps = 54/1446 (4%) Strand=Plus/Plus Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||| | || | || | || | |||||| | ||| |||||||| ||||| | Sbjct 10003402 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTT 10003460 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 | || || ||||| || | ||| |||| |||||||| | ||| || |||| Sbjct 10003461 TAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTT-TCCAT----AG-TTTG 10003514 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 | ||| || | | | ||||| ||||| ||||| || | ||| | | || | Sbjct 10003515 GCTCGGCCAC------ATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGAT 10003568 Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| | || | ||| ||||||| || || || ||||||||| | | Sbjct 10003569 CGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACAC--CGTCTTGTACA-GAT 10003625 Query 243973 CTTG-AGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030 || | | | || ||| | || ||||| || | ||| ||| || | || |||| | Sbjct 10003626 CTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGAT-ATGATC 10003684 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCG-ACCAGGTGCC 244088 ||| | ||||| |||| ||||| | ||| || | || | | || | || || Sbjct 10003685 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTT-AG-GTCGCGCAACAAATGAT 10003742 Query 244089 TGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCG 244148 ||| |||||||| || || || ||||| || || || ||| | ||| || || || Sbjct 10003743 GGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACG 10003802 Query 244149 GCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACA 244208 |||||| | || ||||||||| |||||| || || ||||| |||||||| | | Sbjct 10003803 GCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAA 10003862 Query 244209 CCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTC 244266 | ||||| ||||| || |||||| ||| ||| || || | | | | |||||| Sbjct 10003863 CGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATG--GACTCCTTCAATTTCTGCCAGTC 10003920 Query 244267 CCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT 244326 ||||| | || | ||| | |||||||||| |||||| | || || Sbjct 10003921 CCACAGGTTCGTTGGCACCTTGT---------CCCACATGTCGTACTGCAAAATTCCTTT 10003971 Query 244327 GCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT 244386 ||| || ||||||||||||||||| ||| ||||| ||| ||||||||| | ||||| Sbjct 10003972 GCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCT 10004031 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | || | |||| | ||||| || || || || ||| || |||| | | ||| | Sbjct 10004032 GGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTC 10004091 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 ||| | | |||| | ||| | || ||| | || || | |||||| | || || Sbjct 10004092 TTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAAT 10004151 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 ||| | ||| | || | | ||||| | | || || |||| || ||| | ||| Sbjct 10004152 GCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGAT 10004211 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 || || | |||||| || || ||| | || ||| || ||| || || Sbjct 10004212 ATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAA 10004271 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 || ||| | || ||||| | || ||| ||||||||||| | Sbjct 10004272 ATCATACGTCT-----TCTCCGGCG----------TGACGAACATGTTGAGGGCGATGGA 10004316 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||||| ||||||||| || | ||| |||| || || | || || || ||||| | Sbjct 10004317 GGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAA 10004376 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| |||||||| |||||||| | | ||| || ||| ||| |||||| |||||||| Sbjct 10004377 GTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTT 10004436 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 | |||||||| | || |||||||| | || || | | || | ||| ||| Sbjct 10004437 GAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGA 10004496 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 |||||| ||||| | | ||| |||||| |||||| |||||| || Sbjct 10004497 TTGAGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTC 10004556 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCA 244986 ||| || |||||| || |||| || || || ||| ||||||||||| ||| Sbjct 10004557 GAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCA 10004616 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 || ||| | ||| || | | ||||||||| ||||| ||||| ||||| | || || Sbjct 10004617 ATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAG 10004676 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | | | | ||| || ||| ||||||||| |||| |||| || |||||||| Sbjct 10004677 ATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGAC 10004736 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || ||||||||| |||| || | || | ||| ||||| |||||| ||||||||| Sbjct 10004737 ATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTG 10004796 Query 245167 GTCCAC 245172 ||||| Sbjct 10004797 ATCCAC 10004802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944249263495440