Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq6424 100 2e-16
seq2 100 2e-16
seq4 87.8 1e-12
>seq6424
Length=2770
Score = 100 bits (110), Expect = 2e-16
Identities = 71/79 (90%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 2278 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 2219
Query 115589 AAAACTGATATATTGAGCC 115607
| |||||||||| ||||||
Sbjct 2218 ATAACTGATATAATGAGCC 2200
Score = 100 bits (110), Expect = 2e-16
Identities = 71/79 (90%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391
|||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||
Sbjct 2278 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 2219
Query 114392 AAAACTGATATATTGAGCC 114410
| |||||||||| ||||||
Sbjct 2218 ATAACTGATATAATGAGCC 2200
>seq2
Length=21544594
Score = 100 bits (110), Expect = 2e-16
Identities = 134/183 (73%), Gaps = 4/183 (2%)
Strand=Plus/Plus
Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899
|||||||| |||| ||| | ||||| ||||||||||| || ||||| | | ||||||
Sbjct 4549514 TGTGGAACTCGGCGCAACTGCAGCTCGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGCA 4549573
Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957
|||| ||| ||| || ||| |||||||| ||| || | | || | ||| | | ||
Sbjct 4549574 TGTACTGGGCCAAAAAGATTCTGGAATGGACTG-CGACAC-CGGAACAGGCGTTGGAGTA 4549631
Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017
||| || || || || |||||||| |||| || || || |||||||| || |||||
Sbjct 4549632 CGCGATCCTGCTGAACGACAAGTACAGTCTGGATGGACGCGACCCCAACGGCTATGTCGG 4549691
Query 38018 CTG 38020
|||
Sbjct 4549692 CTG 4549694
>seq4
Length=24153973
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| | || || ||||||| ||||| || ||||||||| ||||||||||| | |
Sbjct 3789601 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3789660
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| || |||| |||| |||||||||||| || ||||| |||||||||||
Sbjct 3789661 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 3789713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397025530150438
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |