Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq6424 100 2e-16 seq2 100 2e-16 seq4 87.8 1e-12 >seq6424 Length=2770 Score = 100 bits (110), Expect = 2e-16 Identities = 71/79 (90%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 2278 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 2219 Query 115589 AAAACTGATATATTGAGCC 115607 | |||||||||| |||||| Sbjct 2218 ATAACTGATATAATGAGCC 2200 Score = 100 bits (110), Expect = 2e-16 Identities = 71/79 (90%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 2278 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 2219 Query 114392 AAAACTGATATATTGAGCC 114410 | |||||||||| |||||| Sbjct 2218 ATAACTGATATAATGAGCC 2200 >seq2 Length=21544594 Score = 100 bits (110), Expect = 2e-16 Identities = 134/183 (73%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | ||||| ||||||||||| || ||||| | | |||||| Sbjct 4549514 TGTGGAACTCGGCGCAACTGCAGCTCGTGCGCGAGGGAAAAATGCACGGCTTTTTGCGCA 4549573 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957 |||| ||| ||| || ||| |||||||| ||| || | | || | ||| | | || Sbjct 4549574 TGTACTGGGCCAAAAAGATTCTGGAATGGACTG-CGACAC-CGGAACAGGCGTTGGAGTA 4549631 Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017 ||| || || || || |||||||| |||| || || || |||||||| || ||||| Sbjct 4549632 CGCGATCCTGCTGAACGACAAGTACAGTCTGGATGGACGCGACCCCAACGGCTATGTCGG 4549691 Query 38018 CTG 38020 ||| Sbjct 4549692 CTG 4549694 >seq4 Length=24153973 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||| ||||| || ||||||||| ||||||||||| | | Sbjct 3789601 CCTCCACGGAGACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGAC 3789660 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| |||||||||||| || ||||| ||||||||||| Sbjct 3789661 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 3789713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397025530150438