Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 8e-28
seq9 138 3e-27
seq3570 134 3e-26
seq4 127 5e-24
seq671 91.5 3e-13
>seq1
Length=23539531
Score = 140 bits (154), Expect = 8e-28
Identities = 155/204 (76%), Gaps = 7/204 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || |||||||| | ||| ||||| || ||||| | || || || ||||||
Sbjct 10088906 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 10088847
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| ||
Sbjct 10088846 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 10088790
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| |||| ||| || ||| || || || ||||| ||||| || || || |||||
Sbjct 10088789 TTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 10088730
Query 288460 ACGAATATCTGCATTATGTTATTC 288483
||||| |||||||| || |||||
Sbjct 10088729 ACGAAGATCTGCATCTTG-TATTC 10088707
Score = 104 bits (114), Expect = 6e-17
Identities = 140/194 (72%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || ||||| || || || | || || || ||||||
Sbjct 4075106 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 4075047
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| ||| |||||| || || || ||||||||||| || || || ||
Sbjct 4075046 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTATCCTGGATCTTAGCCTTGACA 4074990
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || | || || || | ||||| ||||| ||||| || || ||
Sbjct 4074989 TTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 4074930
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 4074929 ACGAAGATCTGCAT 4074916
>seq9
Length=20829647
Score = 138 bits (152), Expect = 3e-27
Identities = 173/235 (74%), Gaps = 7/235 (3%)
Strand=Plus/Plus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| |||||||| || | || || | |||| || || || ||||| || ||||
Sbjct 5792237 CATG-CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 5792295
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
||| || ||||||||||| || | || ||||| |||||||||| |||||| || ||
Sbjct 5792296 CGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTG---AT 5792352
Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418
|| |||||||| || || |||||||| || || || ||||| || || | |||| |
Sbjct 5792353 CTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATG 5792412
Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || | ||||| ||||| || ||||||||||| ||||| ||||||||
Sbjct 5792413 GCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
Score = 125 bits (138), Expect = 2e-23
Identities = 145/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || ||||||||||| || | || ||||| |||||
Sbjct 5792505 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAA 5792564
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| || |||| |||||||| || || |||||||| || || || ||
Sbjct 5792565 ATCAAACGCTGCTG---ATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 5792621
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || | ||||| ||||| ||||||||||||||
Sbjct 5792622 TTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTA 5792681
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 5792682 ACGAAAATTTGCAT 5792695
>seq3570
Length=216
Score = 134 bits (148), Expect = 3e-26
Identities = 147/194 (76%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| || ||||||||||| || | || ||||| ||||||
Sbjct 197 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAG 138
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| |||||| ||| |||||| ||||| || || |||||||| || || || |||
Sbjct 137 ATCAAACGCTGCTGA---TCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 81
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | |||| | || || || | ||||| ||||| || |||||||||||
Sbjct 80 TTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTC 21
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 20 ACGAAGATCTGCAT 7
>seq4
Length=24153973
Score = 127 bits (140), Expect = 5e-24
Identities = 148/197 (75%), Gaps = 12/197 (6%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || || |||| || |||||||||||||| | ||| || || ||||||
Sbjct 3789637 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAG 3789696
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || |||| |||||||| || |||||||| || || || |||||
Sbjct 3789697 ATCAGACGCTGCTG---ATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACA 3789753
Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
|| || || | || |||| || || || | ||||| ||||| || || ||||||
Sbjct 3789754 TTCTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTC 3789810
Query 288457 TTGACGAATATCTGCAT 288473
|| ||||| ||||||||
Sbjct 3789811 TTCACGAAGATCTGCAT 3789827
Score = 113 bits (124), Expect = 1e-19
Identities = 158/223 (71%), Gaps = 24/223 (11%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTT---------- 288332
|| || ||||| || || |||| || |||||||||||||| | ||| ||
Sbjct 3789865 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGTGGAT 3789924
Query 288333 ------TCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTG 288383
||| ||||||||||||||||| || ||||||| ||||| || ||||||||
Sbjct 3789925 GAGGCTTCCGGCGAAGATCAGACGCTGCTG---ATCTGGGGGAATTCCCTCCTTATCCTG 3789981
Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443
|| || || || || || || || | || || ||||| ||||| ||||| |||||
Sbjct 3789982 AATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTT 3790041
Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTATTCT 288484
||||||| ||||| || || ||||||||| || |||||||
Sbjct 3790042 TCCGGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATTCT 3790084
>seq671
Length=216
Score = 91.5 bits (100), Expect = 3e-13
Identities = 124/172 (72%), Gaps = 6/172 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || |||||||| || || | || || || ||||||
Sbjct 48 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAG 107
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||||||||| || |||| || ||||| || || || ||||| || || |||||
Sbjct 108 ATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACA 164
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451
|| || || | || | || ||||| || ||||| ||||| |||||||
Sbjct 165 TTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCA 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179539243980682
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |