Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq9 138 3e-27 seq3570 134 3e-26 seq4 127 5e-24 seq671 91.5 3e-13 >seq1 Length=23539531 Score = 140 bits (154), Expect = 8e-28 Identities = 155/204 (76%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 10088906 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 10088847 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 10088846 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 10088790 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| || ||| || || || ||||| ||||| || || || ||||| Sbjct 10088789 TTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 10088730 Query 288460 ACGAATATCTGCATTATGTTATTC 288483 ||||| |||||||| || ||||| Sbjct 10088729 ACGAAGATCTGCATCTTG-TATTC 10088707 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || || || | || || || |||||| Sbjct 4075106 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAG 4075047 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| |||||| || || || ||||||||||| || || || || Sbjct 4075046 ATCAGACGCTGCTGA---TCTGGGGGAATGCCCTCCTTATCCTGGATCTTAGCCTTGACA 4074990 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || | ||||| ||||| ||||| || || || Sbjct 4074989 TTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTC 4074930 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 4074929 ACGAAGATCTGCAT 4074916 >seq9 Length=20829647 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | |||| || || || ||||| || |||| Sbjct 5792237 CATG-CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGT 5792295 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||||||||| || | || ||||| |||||||||| |||||| || || Sbjct 5792296 CGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTG---AT 5792352 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| || || |||||||| || || || ||||| || || | |||| | Sbjct 5792353 CTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATG 5792412 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 5792413 GCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || ||||| ||||| Sbjct 5792505 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAA 5792564 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| || |||| |||||||| || || |||||||| || || || || Sbjct 5792565 ATCAAACGCTGCTG---ATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACA 5792621 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| |||||||||||||| Sbjct 5792622 TTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTA 5792681 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 5792682 ACGAAAATTTGCAT 5792695 >seq3570 Length=216 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || ||||| |||||| Sbjct 197 TCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAG 138 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| ||||| || || |||||||| || || || ||| Sbjct 137 ATCAAACGCTGCTGA---TCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 81 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || ||||||||||| Sbjct 80 TTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTC 21 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 20 ACGAAGATCTGCAT 7 >seq4 Length=24153973 Score = 127 bits (140), Expect = 5e-24 Identities = 148/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || |||| || |||||||||||||| | ||| || || |||||| Sbjct 3789637 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAG 3789696 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| |||||||| || |||||||| || || || ||||| Sbjct 3789697 ATCAGACGCTGCTG---ATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACA 3789753 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || |||| || || || | ||||| ||||| || || |||||| Sbjct 3789754 TTCTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTC 3789810 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 3789811 TTCACGAAGATCTGCAT 3789827 Score = 113 bits (124), Expect = 1e-19 Identities = 158/223 (71%), Gaps = 24/223 (11%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTT---------- 288332 || || ||||| || || |||| || |||||||||||||| | ||| || Sbjct 3789865 TCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGTGGAT 3789924 Query 288333 ------TCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTG 288383 ||| ||||||||||||||||| || ||||||| ||||| || |||||||| Sbjct 3789925 GAGGCTTCCGGCGAAGATCAGACGCTGCTG---ATCTGGGGGAATTCCCTCCTTATCCTG 3789981 Query 288384 GATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTT 288443 || || || || || || || || | || || ||||| ||||| ||||| ||||| Sbjct 3789982 AATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTCGAGGGTGATGGTCTT 3790041 Query 288444 CCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTATTCT 288484 ||||||| ||||| || || ||||||||| || ||||||| Sbjct 3790042 TCCGGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATTCT 3790084 >seq671 Length=216 Score = 91.5 bits (100), Expect = 3e-13 Identities = 124/172 (72%), Gaps = 6/172 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || |||||||| || || | || || || |||||| Sbjct 48 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAG 107 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || |||| || ||||| || || || ||||| || || ||||| Sbjct 108 ATCAGACGCTGCTG---ATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACA 164 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCA 288451 || || || | || | || ||||| || ||||| ||||| ||||||| Sbjct 165 TTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179539243980682