Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq1 176 5e-39
seq2 136 5e-27
>seq1
Length=23539531
Score = 176 bits (194), Expect = 5e-39
Identities = 632/983 (64%), Gaps = 9/983 (1%)
Strand=Plus/Plus
Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001
|| || || || ||||| ||||| ||| | |||||||| |||| || || || || ||
Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843
Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061
|| ||||||||||| || | ||| || ||| |||| ||| | | | ||||| |||
Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903
Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121
|| | | |||||| | | | ||| | || | |||||| || |||| |
Sbjct 10003904 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 10003963
Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181
|| |||| | | || ||||| | || |||||||| || || || |||| |
Sbjct 10003964 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGT 10004023
Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241
||| |||| || || | ||| | | || || || ||||| || | |||||
Sbjct 10004024 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGA 10004083
Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301
||| || ||| || ||| || || | ||| || |||| |||| || ||
Sbjct 10004084 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 10004143
Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATA 114360
| ||| | ||| | || ||||| |||| ||| ||||| | || ||| || |||||
Sbjct 10004144 ATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGC-CTCTGGCAGCGGATA 10004202
Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420
| |||| |||| || | | | |||||||||||||| || | |||||||| ||| | ||
Sbjct 10004203 ATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAG 10004262
Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480
||| | | ||||| | | |||| |||| || | |||||||| || ||
Sbjct 10004263 CTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGC 10004319
Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540
|| || || || | |||||||| | || || | |||||||| ||||| ||
Sbjct 10004320 CAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTT 10004379
Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600
| |||||||||||| | |||| || || ||| |||| || || |||||| |
Sbjct 10004380 GCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10004439
Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC--CAGACATCG 114658
|||||||| || | || |||||| ||| | || | || || | ||| || |
Sbjct 10004440 GAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG 10004499
Query 114659 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCA 114718
|| || || |||||| || ||||| | |||||| || ||| || |||
Sbjct 10004500 --AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCG 10004557
Query 114719 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 114778
|| || || ||| | || ||| ||||| ||| | ||||| | ||| |||||
Sbjct 10004558 AATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAA 10004617
Query 114779 TGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGA 114838
| ||| |||| || || ||||||||||| || || ||||| || || | || |||
Sbjct 10004618 TCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGA 10004677
Query 114839 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 114898
|| || |||| ||||| | ||| || || |||| || || | || |
Sbjct 10004678 TCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACA 10004737
Query 114899 TCCGCGTGCCACGGTTCCAGGTA 114921
|||| |||||| |||||||| ||
Sbjct 10004738 TCCGAGTGCCAGGGTTCCAGATA 10004760
Score = 107 bits (118), Expect = 2e-18
Identities = 170/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966
||||||||| ||| | | || || ||||||||||| | || ||||| ||||| || ||
Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676
Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025
||| | ||||| | | | ||||| || || || || ||| || ||||| || || |
Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735
Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085
|||| |||||||||||| | ||||| || | | | | ||| |||||||||| ||||
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145
|||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| |
Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855
Query 172146 C 172146
|
Sbjct 18945856 C 18945856
>seq2
Length=21544594
Score = 136 bits (150), Expect = 5e-27
Identities = 286/420 (68%), Gaps = 6/420 (1%)
Strand=Plus/Plus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCC 125815
||| ||| | ||| ||| ||||| ||||| ||||| || |||| || ||||| |||||
Sbjct 8575034 GTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCA-GC-GATATCATCTCC 8575091
Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
|| || | ||||||||| || | ||| | || || || || | || ||| | |
Sbjct 8575092 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 8575151
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
|| |||| ||| |||||||||||| |||||| || ||||||| ||||| | ||
Sbjct 8575152 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG 8575211
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
|| || || || || |||| ||| |||||| |||| || || || | ||| ||
Sbjct 8575212 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 8575271
Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 126054
||| || | |||| ||| | | || || ||| | ||||||||| ||
Sbjct 8575272 ATGATGCGCTCGCGCTTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 8575330
Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114
||| | |||||||| || ||||| || || || |||||| || ||| ||||| ||
Sbjct 8575331 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 8575390
Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174
||| |||||||| | ||||||||| | || || ||||||||| ||||||||
Sbjct 8575391 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 8575450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597296709536520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |