Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 176 5e-39 seq2 136 5e-27 >seq1 Length=23539531 Score = 176 bits (194), Expect = 5e-39 Identities = 632/983 (64%), Gaps = 9/983 (1%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 || || || || ||||| ||||| ||| | |||||||| |||| || || || || || Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || ||||||||||| || | ||| || ||| |||| ||| | | | ||||| ||| Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903 Query 114062 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 || | | |||||| | | | ||| | || | |||||| || |||| | Sbjct 10003904 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 10003963 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || |||| | | || ||||| | || |||||||| || || || |||| | Sbjct 10003964 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGT 10004023 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||| || || | ||| | | || || || ||||| || | ||||| Sbjct 10004024 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGA 10004083 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 ||| || ||| || ||| || || | ||| || |||| |||| || || Sbjct 10004084 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 10004143 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATA 114360 | ||| | ||| | || ||||| |||| ||| ||||| | || ||| || ||||| Sbjct 10004144 ATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGC-CTCTGGCAGCGGATA 10004202 Query 114361 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 114420 | |||| |||| || | | | |||||||||||||| || | |||||||| ||| | || Sbjct 10004203 ATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAG 10004262 Query 114421 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 114480 ||| | | ||||| | | |||| |||| || | |||||||| || || Sbjct 10004263 CTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGC 10004319 Query 114481 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 114540 || || || || | |||||||| | || || | |||||||| ||||| || Sbjct 10004320 CAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTT 10004379 Query 114541 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 114600 | |||||||||||| | |||| || || ||| |||| || || |||||| | Sbjct 10004380 GCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10004439 Query 114601 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC--CAGACATCG 114658 |||||||| || | || |||||| ||| | || | || || | ||| || | Sbjct 10004440 GAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG 10004499 Query 114659 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCA 114718 || || || |||||| || ||||| | |||||| || ||| || ||| Sbjct 10004500 --AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCG 10004557 Query 114719 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 114778 || || || ||| | || ||| ||||| ||| | ||||| | ||| ||||| Sbjct 10004558 AATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCAA 10004617 Query 114779 TGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGA 114838 | ||| |||| || || ||||||||||| || || ||||| || || | || ||| Sbjct 10004618 TCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGA 10004677 Query 114839 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 114898 || || |||| ||||| | ||| || || |||| || || | || | Sbjct 10004678 TCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACA 10004737 Query 114899 TCCGCGTGCCACGGTTCCAGGTA 114921 |||| |||||| |||||||| || Sbjct 10004738 TCCGAGTGCCAGGGTTCCAGATA 10004760 Score = 107 bits (118), Expect = 2e-18 Identities = 170/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||||||||| ||| | | || || ||||||||||| | || ||||| ||||| || || Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| | ||||| | | | ||||| || || || || ||| || ||||| || || | Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 |||| |||||||||||| | ||||| || | | | | ||| |||||||||| |||| Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 |||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| | Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855 Query 172146 C 172146 | Sbjct 18945856 C 18945856 >seq2 Length=21544594 Score = 136 bits (150), Expect = 5e-27 Identities = 286/420 (68%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATAT--TCTCC 125815 ||| ||| | ||| ||| ||||| ||||| ||||| || |||| || ||||| ||||| Sbjct 8575034 GTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCA-GC-GATATCATCTCC 8575091 Query 125816 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 || || | ||||||||| || | ||| | || || || || | || ||| | | Sbjct 8575092 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 8575151 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || |||| ||| |||||||||||| |||||| || ||||||| ||||| | || Sbjct 8575152 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG 8575211 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || || || |||| ||| |||||| |||| || || || | ||| || Sbjct 8575212 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 8575271 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 126054 ||| || | |||| ||| | | || || ||| | ||||||||| || Sbjct 8575272 ATGATGCGCTCGCGCTTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 8575330 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||||| || ||||| || || || |||||| || ||| ||||| || Sbjct 8575331 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 8575390 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||||| | ||||||||| | || || ||||||||| |||||||| Sbjct 8575391 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 8575450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597296709536520