Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq1 210 2e-49
seq9 111 2e-19
seq4 104 2e-17
seq671 93.3 4e-14
>seq1
Length=23539531
Score = 210 bits (232), Expect = 2e-49
Identities = 556/839 (66%), Gaps = 14/839 (2%)
Strand=Plus/Plus
Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731
|||| |||||| || || |||| ||| || || || || |||| ||| ||||| |||
Sbjct 10003397 TTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCG 10003456
Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791
||||| | ||| |||||| | || | ||| | | ||| | | | | |||
Sbjct 10003457 GTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGC 10003516
Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851
| || | | | ||| |||||||| |||||||| ||||| || || |||||||| |||
Sbjct 10003517 TCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCC 10003576
Query 153852 ATGTCAATCAAGTTTTT-ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTC 153910
|| | |||| | || |||| ||||||||||| || ||||| | || | |
Sbjct 10003577 ATTTTAATCGTGGACTTGACTGAG-ATTTCCCACACCGTCTTGTACAGATCTCGCACCTT 10003635
Query 153911 GTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCAT 153970
| ||||||| ||||| || || | || | | || ||| || || |||
Sbjct 10003636 CTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCAT 10003695
Query 153971 GTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTG 154030
|| |||||| |||| | ||| || || | ||| || ||||| | || ||
Sbjct 10003696 GTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTG 10003755
Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090
|| ||||||| || || || || || | || ||||| |||||||||| |||||
Sbjct 10003756 GAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTC 10003815
Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150
|||||||| | ||| |||||||||| ||| |||||||| || || | || |||||
Sbjct 10003816 ATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTT 10003875
Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAAT-CTGCCCAATTCCACAAGTTGGTAG 154209
|| | |||||| || |||| | || || | ||||| | | ||||| ||| || |
Sbjct 10003876 CCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCC-AGTCCCACAGGTTCGTTG 10003934
Query 154210 GTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAAC 154269
| | || |||||||||||| ||||||| || ||| |||| ||| | ||
Sbjct 10003935 GCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 10003994
Query 154270 TAGAGTACGGCCCGTTCAGT-TTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328
| ||| || || ||| || | |||| ||||| |||||||| || || |||||||
Sbjct 10003995 TTTCGTATGGACC-TTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAA 10004053
Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388
| ||||| || || | || || | ||||| || ||||||||||| || | |
Sbjct 10004054 ATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGC 10004113
Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448
| | | || ||||| |||| || ||||| || | || ||||| | || | |||
Sbjct 10004114 ATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAA 10004173
Query 154449 TTCGA-TTCTTTGGCAGCCTC---CAGAGGATAATAATTGATATCGATAATTTTATTTA 154503
|| || ||| || ||||| ||| ||||||||||||||||| || || || ||||
Sbjct 10004174 TTGGACTTCCTT----GCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTA 10004228
Score = 113 bits (124), Expect = 5e-20
Identities = 168/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | || || || || |||||||| || || |
Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| |||||| | ||||| ||||||||||| || | || || |||||||| || |||||
Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TC 64392
|||||||||||| || || | | || ||||| ||| || | |||| ||| || ||
Sbjct 10088823 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTGACATTTTCGATAGTAT--CCGACGGTTC 10088767
Query 64393 CACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| || | ||| | ||||||||| || | || || ||||| || ||||| ||
Sbjct 10088766 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | ||||| || || || |||||||| || |
Sbjct 4075143 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4075084
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | || || |||||||||||||| | || || |||||||| || || ||
Sbjct 4075083 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 4075024
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| || || || || || || || ||| ||| ||| | || ||| | |||||
Sbjct 4075023 AATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCAC 4074964
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | ||||| ||||| || |||||
Sbjct 4074963 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
>seq9
Length=20829647
Score = 111 bits (122), Expect = 2e-19
Identities = 148/206 (72%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||| || || || |||||||| || | | ||||| |||| || ||||||
Sbjct 5792493 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGC 5792552
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| ||||| |||| | |||||||| || || || ||||| || || || || || ||
Sbjct 5792553 TTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 5792612
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| ||| | ||||| | || || || | || | |||||||||||||
Sbjct 5792613 GCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTC 5792672
Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446
| ||| || |||||||||||||| ||
Sbjct 5792673 AGAGTCTTAACGAAAATTTGCATATT 5792698
>seq4
Length=24153973
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| || || || || || ||||||||||| | | |||||| |||||
Sbjct 3789616 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 3789675
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || ||||||||||| | || || |||||||| || || || ||||| || || ||
Sbjct 3789676 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3789735
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || || | || || || | ||| | ||||
Sbjct 3789736 TGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTC 3789795
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | ||| || ||||| || |||||
Sbjct 3789796 TTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Score = 91.5 bits (100), Expect = 1e-13
Identities = 225/337 (67%), Gaps = 11/337 (3%)
Strand=Plus/Minus
Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420
|| || ||||| || || || ||||| || || |||| | ||| ||||||| ||| ||
Sbjct 10848111 GGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGGCTGCATGTCGTCC 10848052
Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGT-CCGCCA 115479
|| ||| |||||||||| | | | || |||||||| || || || | ||| ||
Sbjct 10848051 GGACCGCACTTCAACCCGTATGGCAAGGAGCACGGCGCTCCCGTCG-ACGAGAACCGTCA 10847993
Query 115480 CGTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGACGTCAACAT 115539
| | || |||||||||||| | || | | || | ||| | |||| | ||||||||
Sbjct 10847992 CCTGGGCGATCTGGGCAACATTGAGGCCACCGG---CGACTGCCCCACCAAGGTCAACAT 10847936
Query 115540 GACGAGCGACT---TAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGT 115596
|| ||||| || ||| | | |||| | |||| | |||| |||| | | ||
Sbjct 10847935 CAC---CGACTCCAAGATCACGCTCTTCGGCGCCGACAGCATCATCGGACGCACCGTTGT 10847879
Query 115597 GGTGCACGCGGACCGCGACGATCTCGGCCTTACCGATCATCCGCTAAGCAAAACCACGGG 115656
|||||||| || ||| ||||| |||| | || ||| ||||| | |||||
Sbjct 10847878 CGTGCACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGAGCTGAGCAAGTCAACGGG 10847819
Query 115657 TAACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGC 115693
||| | || | ||| | | ||||||| | || |||
Sbjct 10847818 CAACGCTGGTGCCCGCATCGGCTGCGGCGTTATTGGC 10847782
>seq671
Length=216
Score = 93.3 bits (102), Expect = 4e-14
Identities = 129/181 (71%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| ||||| || || || |||||||| || | | ||||| | || || ||||||
Sbjct 36 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGC 95
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|||||||| | || || |||||||| || ||||||||||| || || ||||| || ||
Sbjct 96 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTA 155
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| ||| | || || | || ||||| | || | |||||| ||||||
Sbjct 156 GCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTC 215
Query 64421 A 64421
|
Sbjct 216 A 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499597215078360
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