Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-49 seq9 111 2e-19 seq4 104 2e-17 seq671 93.3 4e-14 >seq1 Length=23539531 Score = 210 bits (232), Expect = 2e-49 Identities = 556/839 (66%), Gaps = 14/839 (2%) Strand=Plus/Plus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 |||| |||||| || || |||| ||| || || || || |||| ||| ||||| ||| Sbjct 10003397 TTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCG 10003456 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 ||||| | ||| |||||| | || | ||| | | ||| | | | | ||| Sbjct 10003457 GTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGC 10003516 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | || | | | ||| |||||||| |||||||| ||||| || || |||||||| ||| Sbjct 10003517 TCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCC 10003576 Query 153852 ATGTCAATCAAGTTTTT-ACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTC 153910 || | |||| | || |||| ||||||||||| || ||||| | || | | Sbjct 10003577 ATTTTAATCGTGGACTTGACTGAG-ATTTCCCACACCGTCTTGTACAGATCTCGCACCTT 10003635 Query 153911 GTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCAT 153970 | ||||||| ||||| || || | || | | || ||| || || ||| Sbjct 10003636 CTGGGGTATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGATATGATCTGGTTCTTCAT 10003695 Query 153971 GTGGTCGTCGTACAAATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTG 154030 || |||||| |||| | ||| || || | ||| || ||||| | || || Sbjct 10003696 GTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTG 10003755 Query 154031 AAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTC 154090 || ||||||| || || || || || | || ||||| |||||||||| ||||| Sbjct 10003756 GAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTC 10003815 Query 154091 GTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTT 154150 |||||||| | ||| |||||||||| ||| |||||||| || || | || ||||| Sbjct 10003816 ATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTT 10003875 Query 154151 TCGCAAACCGTGTTTTGCAATGCGCAATTTTAAAT-CTGCCCAATTCCACAAGTTGGTAG 154209 || | |||||| || |||| | || || | ||||| | | ||||| ||| || | Sbjct 10003876 CCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCC-AGTCCCACAGGTTCGTTG 10003934 Query 154210 GTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAAC 154269 | | || |||||||||||| ||||||| || ||| |||| ||| | || Sbjct 10003935 GCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGG 10003994 Query 154270 TAGAGTACGGCCCGTTCAGT-TTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTAT 154328 | ||| || || ||| || | |||| ||||| |||||||| || || ||||||| Sbjct 10003995 TTTCGTATGGACC-TTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAA 10004053 Query 154329 ACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCC 154388 | ||||| || || | || || | ||||| || ||||||||||| || | | Sbjct 10004054 ATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGC 10004113 Query 154389 AATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAA 154448 | | | || ||||| |||| || ||||| || | || ||||| | || | ||| Sbjct 10004114 ATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAA 10004173 Query 154449 TTCGA-TTCTTTGGCAGCCTC---CAGAGGATAATAATTGATATCGATAATTTTATTTA 154503 || || ||| || ||||| ||| ||||||||||||||||| || || || |||| Sbjct 10004174 TTGGACTTCCTT----GCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGTTTA 10004228 Score = 113 bits (124), Expect = 5e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | || || || || |||||||| || || | Sbjct 10088943 ACCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 10088884 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 10088883 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 10088824 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TC 64392 |||||||||||| || || | | || ||||| ||| || | |||| ||| || || Sbjct 10088823 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTGACATTTTCGATAGTAT--CCGACGGTTC 10088767 Query 64393 CACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||| | ||||||||| || | || || ||||| || ||||| || Sbjct 10088766 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | ||||| || || || |||||||| || | Sbjct 4075143 ACCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4075084 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || |||||||||||||| | || || |||||||| || || || Sbjct 4075083 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 4075024 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || || || || || ||| ||| ||| | || ||| | ||||| Sbjct 4075023 AATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCAC 4074964 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| ||||| || ||||| Sbjct 4074963 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 >seq9 Length=20829647 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || || |||||||| || | | ||||| |||| || |||||| Sbjct 5792493 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGC 5792552 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| | |||||||| || || || ||||| || || || || || || Sbjct 5792553 TTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTG 5792612 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| | || || || | || | ||||||||||||| Sbjct 5792613 GCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTC 5792672 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | ||| || |||||||||||||| || Sbjct 5792673 AGAGTCTTAACGAAAATTTGCATATT 5792698 >seq4 Length=24153973 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| || || || || || ||||||||||| | | |||||| ||||| Sbjct 3789616 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 3789675 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || || |||||||| || || || ||||| || || || Sbjct 3789676 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCC 3789735 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | || || || | ||| | |||| Sbjct 3789736 TGAATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTC 3789795 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||| || ||||| || ||||| Sbjct 3789796 TTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 225/337 (67%), Gaps = 11/337 (3%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 || || ||||| || || || ||||| || || |||| | ||| ||||||| ||| || Sbjct 10848111 GGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGGCTGCATGTCGTCC 10848052 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGT-CCGCCA 115479 || ||| |||||||||| | | | || |||||||| || || || | ||| || Sbjct 10848051 GGACCGCACTTCAACCCGTATGGCAAGGAGCACGGCGCTCCCGTCG-ACGAGAACCGTCA 10847993 Query 115480 CGTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGACGTCAACAT 115539 | | || |||||||||||| | || | | || | ||| | |||| | |||||||| Sbjct 10847992 CCTGGGCGATCTGGGCAACATTGAGGCCACCGG---CGACTGCCCCACCAAGGTCAACAT 10847936 Query 115540 GACGAGCGACT---TAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGT 115596 || ||||| || ||| | | |||| | |||| | |||| |||| | | || Sbjct 10847935 CAC---CGACTCCAAGATCACGCTCTTCGGCGCCGACAGCATCATCGGACGCACCGTTGT 10847879 Query 115597 GGTGCACGCGGACCGCGACGATCTCGGCCTTACCGATCATCCGCTAAGCAAAACCACGGG 115656 |||||||| || ||| ||||| |||| | || ||| ||||| | ||||| Sbjct 10847878 CGTGCACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGAGCTGAGCAAGTCAACGGG 10847819 Query 115657 TAACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGC 115693 ||| | || | ||| | | ||||||| | || ||| Sbjct 10847818 CAACGCTGGTGCCCGCATCGGCTGCGGCGTTATTGGC 10847782 >seq671 Length=216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || || |||||||| || | | ||||| | || || |||||| Sbjct 36 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGC 95 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || |||||||| || ||||||||||| || || ||||| || || Sbjct 96 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTA 155 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || || | || ||||| | || | |||||| |||||| Sbjct 156 GCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTC 215 Query 64421 A 64421 | Sbjct 216 A 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499597215078360