Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1 205 9e-48 >seq1 Length=23539531 Score = 205 bits (226), Expect = 9e-48 Identities = 872/1368 (64%), Gaps = 45/1368 (3%) Strand=Plus/Minus Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986 ||| ||| |||| ||||||||||| |||| | | ||||||||||||| || ||||| Sbjct 10005022 GCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACGGCCGACTCCATCGAGGGCATTTT 10004963 Query 93987 CGACAGCCTCAAGGACTGTGCGACC--ATCTCAAAATACGCGGGGGGAATCGGGATCAGT 94044 | | | || | || |||| | ||||| || | ||| || || ||||| ||| Sbjct 10004962 CAA--GTCTGTGGAACAATGCGCCATGATCTCCAAGTCCGCCGGTGGCATCGGACTCAAC 10004905 Query 94045 GTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGC 94104 || || | | ||||| | ||| ||| || |||| || ||||| || ||||| || Sbjct 10004904 GTGCATTGCATTCGTGCAAAGGGCACCTCGATTTGCGGCACAAATGGTACTTCCAATGGG 10004845 Query 94105 CTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGG 94164 | || || ||||| ||||||| || || | ||| || || ||||| ||||| || || Sbjct 10004844 TTGGTTCCCATGCTGAGGGTCTTTAATAATGTGGCTCGTTATGTGGATCAGGGAGGCGGC 10004785 Query 94165 AGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTC 94224 | | | ||| | || || | ||||| || ||||||||| |||| || | ||| Sbjct 10004784 AAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCTGGCACTCGGATGTCTTTGAGTTC 10004725 Query 94225 ATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCT 94284 | || ||| |||||| ||||| || | | | || | || || || ||||| Sbjct 10004724 CTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCC 10004665 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344 || ||| | || || || || ||||||||||| ||| ||| | ||| || | Sbjct 10004664 CTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATG 10004605 Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTAT 94404 || ||| | | ||||| || || ||| || || || || ||| | |||| Sbjct 10004604 TGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTAC 10004545 Query 94405 GCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGG 94461 | ||||| |||| ||||| | | ||||| | ||| |||||| Sbjct 10004544 GAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGG 10004488 Query 94462 GATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCT 94521 | ||| | || | || |||||||| || | || ||||| | ||||||||| || Sbjct 10004487 TTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCT 10004428 Query 94522 GTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACC 94581 |||| ||| |||||||||| | | || || ||| || || ||||||| Sbjct 10004427 TGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCATTAAGTGCAGCAACTTGTGCACG 10004368 Query 94582 GAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAAC 94641 || || || || ||| | || ||||| |||||||| || || ||| ||| ||||||| | Sbjct 10004367 GAAATCGTTGAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCC 10004308 Query 94642 CTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT 94701 || || ||||| |||| | ||| ||| | || |||| Sbjct 10004307 CTCAACATGTTCGT------------CACGCCGGAGAAGACGTATGATTTCAAGAAGCTC 10004260 Query 94702 GTGAACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTC 94758 | | || | || ||| || | || || |||| | |||| || | || | Sbjct 10004259 AAGGAAGTCAC---AAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAATTAT 10004203 Query 94759 TACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTC 94818 || || | || ||||| ||| || || ||| |||||| ||| | ||||| || | Sbjct 10004202 TATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCGTGGGCATTGGTATT 10004143 Query 94819 CAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCG 94878 ||||| ||||| || || || | | |||||| | || ||||| ||| | || Sbjct 10004142 CAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGA---AAGCGAAGAAGCC 10004086 Query 94879 GGT---TTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGT 94934 ||| |||||| | | ||||| |||| ||||| || || ||| | ||| | | | | Sbjct 10004085 GGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGGAAGCCAGCTGC 10004026 Query 94935 CCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC- 94993 ||| | ||||| || | || ||| ||||| | | || || |||| || | Sbjct 10004025 GAACTGGCCCAGACCGAA----GGTCCATACGAAAC-CTACGAGGGCAGCCCGGTGAGCA 10003971 Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GA 95051 | || ||||| |||| |||| | |||| | ||| || |||| |||||| || Sbjct 10003970 AAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGA 10003911 Query 95052 AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCAT 95111 | | | | | | ||| || |||||||| ||| | ||||| || || ||||| Sbjct 10003910 AATTGAAGGAGTCCA--TTAAGAAGCACGGTGTCCGGAACTCACTGCTCGTTGCTCCCAT 10003853 Query 95112 GCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTC 95171 |||||| || || || || ||||| | |||||||| || || ||||| || | |||| | Sbjct 10003852 GCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGAGCCGTACACCAC 10003793 Query 95172 CAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT 95231 ||| | |||| | |||| || || |||| ||||||| || ||||| | || | | Sbjct 10003792 GAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTT 10003733 Query 95232 ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 || ||||| || |||| |||||| ||| | | |||||||| Sbjct 10003732 GCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAGAACCA 10003685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494676083799240