Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq1 205 9e-48
>seq1
Length=23539531
Score = 205 bits (226), Expect = 9e-48
Identities = 872/1368 (64%), Gaps = 45/1368 (3%)
Strand=Plus/Minus
Query 93927 GCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTT 93986
||| ||| |||| ||||||||||| |||| | | ||||||||||||| || |||||
Sbjct 10005022 GCCGCAGTTGTCGTCGTGTTTCCTTCTGACCATGACGGCCGACTCCATCGAGGGCATTTT 10004963
Query 93987 CGACAGCCTCAAGGACTGTGCGACC--ATCTCAAAATACGCGGGGGGAATCGGGATCAGT 94044
| | | || | || |||| | ||||| || | ||| || || ||||| |||
Sbjct 10004962 CAA--GTCTGTGGAACAATGCGCCATGATCTCCAAGTCCGCCGGTGGCATCGGACTCAAC 10004905
Query 94045 GTCCACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGC 94104
|| || | | ||||| | ||| ||| || |||| || ||||| || ||||| ||
Sbjct 10004904 GTGCATTGCATTCGTGCAAAGGGCACCTCGATTTGCGGCACAAATGGTACTTCCAATGGG 10004845
Query 94105 CTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGG 94164
| || || ||||| ||||||| || || | ||| || || ||||| ||||| || ||
Sbjct 10004844 TTGGTTCCCATGCTGAGGGTCTTTAATAATGTGGCTCGTTATGTGGATCAGGGAGGCGGC 10004785
Query 94165 AGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTC 94224
| | | ||| | || || | ||||| || ||||||||| |||| || | |||
Sbjct 10004784 AAGCGCCCCGGTGCCTTTGCCATTTATCTGGAACCCTGGCACTCGGATGTCTTTGAGTTC 10004725
Query 94225 ATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCT 94284
| || ||| |||||| ||||| || | | | || | || || || |||||
Sbjct 10004724 CTGGAACTGAAGAAGAACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCC 10004665
Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344
|| ||| | || || || || ||||||||||| ||| ||| | ||| || |
Sbjct 10004664 CTGTGGATACCCGATCTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATG 10004605
Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTAT 94404
|| ||| | | ||||| || || ||| || || || || ||| | ||||
Sbjct 10004604 TGCCCCCACAAGTGTCCAGGTCTCCACGAAGTGTGGGGCGATGAATTCGAAAAGCTGTAC 10004545
Query 94405 GCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGG 94461
| ||||| |||| ||||| | | ||||| | ||| ||||||
Sbjct 10004544 GAGAAATACGAGCAAGAGGGTCGGGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGG 10004488
Query 94462 GATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCT 94521
| ||| | || | || |||||||| || | || ||||| | ||||||||| ||
Sbjct 10004487 TTTGCCATCATTGAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCT 10004428
Query 94522 GTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACC 94581
|||| ||| |||||||||| | | || || ||| || || |||||||
Sbjct 10004427 TGCAACAGGAAGAGCAACCAGCAGAATGTAGGCACCATTAAGTGCAGCAACTTGTGCACG 10004368
Query 94582 GAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAAC 94641
|| || || || ||| | || ||||| |||||||| || || ||| ||| ||||||| |
Sbjct 10004367 GAAATCGTTGAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCC 10004308
Query 94642 CTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTT 94701
|| || ||||| |||| | ||| ||| | || ||||
Sbjct 10004307 CTCAACATGTTCGT------------CACGCCGGAGAAGACGTATGATTTCAAGAAGCTC 10004260
Query 94702 GTGAACTTCGCGGGAAGGATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTC 94758
| | || | || ||| || | || || |||| | |||| || | || |
Sbjct 10004259 AAGGAAGTCAC---AAAGATAGTTACCAAAAATCTAAACAAGATAATTGATATCAATTAT 10004203
Query 94759 TACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTC 94818
|| || | || ||||| ||| || || ||| |||||| ||| | ||||| || |
Sbjct 10004202 TATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGAGGCATCGTCCCGTGGGCATTGGTATT 10004143
Query 94819 CAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCG 94878
||||| ||||| || || || | | |||||| | || ||||| ||| | ||
Sbjct 10004142 CAGGGATTCGCTGATGCCTTGATTCTCATGCGTTTCCCGTACGA---AAGCGAAGAAGCC 10004086
Query 94879 GGT---TTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGT 94934
||| |||||| | | ||||| |||| ||||| || || ||| | ||| | | | |
Sbjct 10004085 GGTCTCTTGAATCAGCAGATATTTGAAACGATTTACTATGGCGCCTTGGAAGCCAGCTGC 10004026
Query 94935 CCACTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC- 94993
||| | ||||| || | || ||| ||||| | | || || |||| || |
Sbjct 10004025 GAACTGGCCCAGACCGAA----GGTCCATACGAAAC-CTACGAGGGCAGCCCGGTGAGCA 10003971
Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GA 95051
| || ||||| |||| |||| | |||| | ||| || |||| |||||| ||
Sbjct 10003970 AAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACGAACCTGTGGGACTGGCAGA 10003911
Query 95052 AGCTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCAT 95111
| | | | | | ||| || |||||||| ||| | ||||| || || |||||
Sbjct 10003910 AATTGAAGGAGTCCA--TTAAGAAGCACGGTGTCCGGAACTCACTGCTCGTTGCTCCCAT 10003853
Query 95112 GCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTC 95171
|||||| || || || || ||||| | |||||||| || || ||||| || | |||| |
Sbjct 10003852 GCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCCTTCGAGCCGTACACCAC 10003793
Query 95172 CAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCT 95231
||| | |||| | |||| || || |||| ||||||| || ||||| | || | |
Sbjct 10003792 GAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTGGTCAACCATCATTTGTT 10003733
Query 95232 ACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279
|| ||||| || |||| |||||| ||| | | ||||||||
Sbjct 10003732 GCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAGAACCA 10003685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494676083799240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |