Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq5 93.3 3e-14
>seq5
Length=27160941
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507
||||||||| | | ||||| | ||| || | || || ||||| ||||| || |||
Sbjct 25358096 CAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTCCATCACAAATACTCGGAGACG 25358037
Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567
|| || || ||||||||||||||||| |||| ||||| |||||||| ||||| |||
Sbjct 25358036 GATGCGGATCCCCACAACGCCAACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTGATG 25357977
Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626
||| ||| | || || || | ||| | ||||| | || ||||||| |||||
Sbjct 25357976 ATGCTGAAGCATCCGGAGGT-ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCT 25357918
Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674
| ||||| ||||| | ||| |||||||| || || || ||
Sbjct 25357917 GGCTGATCCCGTGGTGCGCTTCCACCAGAAGTACTTCATCCCCCTGAA 25357870
Score = 89.7 bits (98), Expect = 4e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946
||||||||||||||||||||||||||||||| ||||||| ||||||||||| || |||
Sbjct 12063781 TCGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCAGAGC 12063722
Query 108947 TGGG 108950
||||
Sbjct 12063721 TGGG 12063718
Score = 86.0 bits (94), Expect = 5e-12
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
|||||||| || ||||| ||||| | ||||| ||||||||||| | || || |
Sbjct 12064485 ACGGCCGGAGTGCATCGTCTGTGGTCGCACAAGGCCTACAAGGCTAAGCTGCCATTGCGC 12064426
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| ||||| ||| ||| || |||| ||||||| |||| | ||||| |
Sbjct 12064425 ATCTTCCTTATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 12064366
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534
|| ||| | || |||||||||| | | ||||| ||||| || |||||| || |
Sbjct 12064365 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGTCGC 12064306
Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||| ||||| ||| | ||| ||||||| ||||
Sbjct 12064305 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 12064251
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918
|| |||| | |||||| ||||| |||| ||||||||||| ||||||||||||||
Sbjct 12842075 GAGAACATCTCGGTGGCTATCTTGGCCTTCGGAGAGGGATGGCATAACTACCACCACGTC 12842016
Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAA 108953
||||||| ||||||||| | |||||||| || ||
Sbjct 12842015 TTCCCCTGGGACTACAAGACGGCCGAGTTTGGCAA 12841981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381737349890136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |