Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 3e-14 >seq5 Length=27160941 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||| | ||| || | || || ||||| ||||| || ||| Sbjct 25358096 CAGAACACCCTGTACGACTGGGTTCGCGACCATCGAGTCCATCACAAATACTCGGAGACG 25358037 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || ||||||||||||||||| |||| ||||| |||||||| ||||| ||| Sbjct 25358036 GATGCGGATCCCCACAACGCCAACAGGGGATTCTTCTTCTCCCACGTGGGCTGGCTGATG 25357977 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATA 108626 ||| ||| | || || || | ||| | ||||| | || ||||||| ||||| Sbjct 25357976 ATGCTGAAGCATCCGGAGGT-ACTTCGTCGTGGTCGCCAGATCGACATGAGCGACATTCT 25357918 Query 108627 CTCCGATCCGGTGGTAGTGTGGCACACCAAGTACTTTATTCCTCTTAA 108674 | ||||| ||||| | ||| |||||||| || || || || Sbjct 25357917 GGCTGATCCCGTGGTGCGCTTCCACCAGAAGTACTTCATCCCCCTGAA 25357870 Score = 89.7 bits (98), Expect = 4e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 ||||||||||||||||||||||||||||||| ||||||| ||||||||||| || ||| Sbjct 12063781 TCGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCAGAGC 12063722 Query 108947 TGGG 108950 |||| Sbjct 12063721 TGGG 12063718 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| || ||||| ||||| | ||||| ||||||||||| | || || | Sbjct 12064485 ACGGCCGGAGTGCATCGTCTGTGGTCGCACAAGGCCTACAAGGCTAAGCTGCCATTGCGC 12064426 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| || |||| ||||||| |||| | ||||| | Sbjct 12064425 ATCTTCCTTATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 12064366 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||| | | ||||| ||||| || |||||| || | Sbjct 12064365 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGTCGC 12064306 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 12064305 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 12064251 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || |||| | |||||| ||||| |||| ||||||||||| |||||||||||||| Sbjct 12842075 GAGAACATCTCGGTGGCTATCTTGGCCTTCGGAGAGGGATGGCATAACTACCACCACGTC 12842016 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAA 108953 ||||||| ||||||||| | |||||||| || || Sbjct 12842015 TTCCCCTGGGACTACAAGACGGCCGAGTTTGGCAA 12841981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381737349890136