Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 1e-18
seq4 86.0 4e-12
seq3570 84.2 2e-11
seq1 82.4 5e-11
>seq9
Length=20829647
Score = 107 bits (118), Expect = 1e-18
Identities = 163/232 (70%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || || |||||||| || || || || |||||||| |||
Sbjct 5792467 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 5792526
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | |||| || | || || || ||| | ||||||||||| || || |
Sbjct 5792527 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 5792586
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||| |||||||| || ||| || ||| | || || |||||| || |
Sbjct 5792587 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGA 5792646
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| || ||||| ||||| || || |||||||| || || ||||||||||||||
Sbjct 5792647 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || || |||||||| || || || || |||||||| |||
Sbjct 5792239 TGCCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 5792298
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
||| | | |||| || | || || || ||| | ||||||||||| || || |
Sbjct 5792299 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5792358
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||| |||||||| || ||| || || | || || |||||| || |
Sbjct 5792359 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAA 5792418
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || || || ||||| || || |||||||| || || || || |||||
Sbjct 5792419 CCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
>seq4
Length=24153973
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || |||||||| || || || || |||||||||||| || | | |||||||
Sbjct 3789619 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789678
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||| ||||| ||| | |||| |||||| || || || ||||| ||||| || |
Sbjct 3789679 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3789738
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146
|| ||| || ||| | || || || || | || || || || || || ||||| ||
Sbjct 3789739 ATCTTGGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| || || || || ||||||
Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCATA 3789828
>seq3570
Length=216
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || |||||||| || || || || |||||||| ||| ||| | | |||| ||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || || ||| | ||||||||||| || || || ||||| ||||||||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| ||| || || | || || |||||| || || || ||||| ||||| ||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| |||||||| || || || || |||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCAT 7
>seq1
Length=23539531
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || || || || || || || || ||||| || || |
Sbjct 10088942 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10088883
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | | ||||| | || ||||||||| | |||| |||||| || || |||
Sbjct 10088882 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10088823
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|||||||| ||||| ||| ||| ||| ||| |||| |||||||| ||| ||
Sbjct 10088822 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 10088763
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| | || ||||| || || || || || || || || || ||||| ||
Sbjct 10088762 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357358813807415
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |