Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9 107 1e-18 seq4 86.0 4e-12 seq3570 84.2 2e-11 seq1 82.4 5e-11 >seq9 Length=20829647 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 5792467 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 5792526 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 5792527 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 5792586 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || ||| | || || |||||| || | Sbjct 5792587 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGA 5792646 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || ||||| ||||| || || |||||||| || || |||||||||||||| Sbjct 5792647 CCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 5792239 TGCCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 5792298 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 5792299 ACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 5792358 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || |||||| || | Sbjct 5792359 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAA 5792418 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || || |||||||| || || || || ||||| Sbjct 5792419 CCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467 >seq4 Length=24153973 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||||||| || | | ||||||| Sbjct 3789619 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789678 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | |||| |||||| || || || ||||| ||||| || | Sbjct 3789679 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3789738 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| || ||| | || || || || | || || || || || || ||||| || Sbjct 3789739 ATCTTGGCCTTCACATTCTCAATGGTGTC-CGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || || || || |||||| Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCATA 3789828 >seq3570 Length=216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || || ||| | ||||||||||| || || || ||||| |||||||| Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || |||||| || || || ||||| ||||| || Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || ||||| Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCAT 7 >seq1 Length=23539531 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || || || ||||| || || | Sbjct 10088942 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10088883 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||||||| | |||| |||||| || || ||| Sbjct 10088882 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10088823 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| ||| ||| ||| |||| |||||||| ||| || Sbjct 10088822 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 10088763 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || || || || || || ||||| || Sbjct 10088762 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357358813807415