Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 327 1e-84 >seq1 Length=23539531 Score = 327 bits (362), Expect = 1e-84 Identities = 1163/1800 (65%), Gaps = 48/1800 (3%) Strand=Plus/Minus Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956 |||| |||| || || || |||||||| |||||||| || || || | || ||| Sbjct 10005175 AAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 10005116 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 || ||||| || ||||| || || | |||| | | ||||| || || Sbjct 10005115 GGATATCGATGCAGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACACATGC 10005056 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 ||||| |||| ||||| | ||| || ||| |||||||| |||||||| | || Sbjct 10005055 ATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCT 10004996 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 ||| || | ||| |||| || || | | || || | ||||| |||| Sbjct 10004995 GACCATGACGGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGAT 10004936 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | | ||| ||||| || | |||||||| | | | | || | | Sbjct 10004935 CTCCAAGTCCGCCGGTGGCATCGGACTCAACGTGCATTGCATTCGTGCAAAGGGCACCTC 10004876 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 || | |||| | || | || ||| | | |||||||| | || | ||||| Sbjct 10004875 GATTTGCGGCACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTTAATAA 10004816 Query 123257 CGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCT 123313 | | || | || || ||||| |||||| ||| || || | || || ||||| Sbjct 10004815 TGTGGCTCGTTATGTGGATCAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCT 10004756 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGGCGG 123372 ||||| |||||| ||||| | || || | || | || | | |||| ||| | Sbjct 10004755 GGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGGCAAAG 10004697 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 |||| || || |||||| |||| ||||| | ||| |||||||| | || ||| || Sbjct 10004696 AAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAAC 10004637 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492 |||| | | | |||| | |||||||||||||| ||| | |||||| || | || Sbjct 10004636 GCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACG 10004577 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG------CA 123546 | || | ||| || | || || || |||||| | ||||||||| || || || Sbjct 10004576 AAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCA 10004517 Query 123547 AACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACACAA 123602 | | ||||| ||| || | | ||| |||| || || || | ||| Sbjct 10004516 ACCGAACGGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATCATTGAGGCGCAA 10004467 Query 123603 GTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG 123662 || || ||||||| ||||||||||||| ||| ||||| ||||||||||| | ||| ||| Sbjct 10004466 GTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAG 10004407 Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722 || | || || || || || || || | ||| | ||||| | ||||| | Sbjct 10004406 CAGAATGTAGGCACCATTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCA 10004347 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCG 123777 | ||| | | || || || || ||||| || || | | || |||| || || Sbjct 10004346 CCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCG 10004287 Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATT 123837 | | | || | | ||||| | | |||||| | ||||| | || || ||| Sbjct 10004286 GAGAAGACG--TATGATTTCAAGAAGCTCAAGGAAGTCACAAAGATAGTTACCAAAAATC 10004229 Query 123838 TGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGA 123897 | ||||| || || ||| | |||| |||||| || || || | ||| ||||||| Sbjct 10004228 TAAACAAGATAATTGATATCAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGA 10004169 Query 123898 AACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCA 123957 || | || || || | || ||||| || || || || || || | | |||| Sbjct 10004168 GGCATCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTT 10004109 Query 123958 TGCCGTACGAAAGCGACGAAGCAAAGTTGCTT-AATACGCAAATAGCCGAAACAATTTAT 124016 | |||||||||||||| ||||| || ||| ||| ||| ||| ||||| ||||| Sbjct 10004108 TCCCGTACGAAAGCGAAGAAGCCG-GTCTCTTGAATCAGCAGATATTTGAAACGATTTAC 10004050 Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 || ||||| ||||| || ||||||||||| || | | | || | ||||||| ||| Sbjct 10004049 TATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTAC 10003990 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 | ||||||||||| |||| ||| ||||||||||||||||||||| | || || Sbjct 10003989 GAGGGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACG 10003930 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 || ||||||||||| || || | ||| || ||||||| | || ||||| Sbjct 10003929 AACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCA 10003870 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 ||| | || || |||||| || ||| | || ||||| || | || ||||| |||||| Sbjct 10003869 CTGCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCC 10003810 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 |||||||||| ||| | || | ||| || ||||| | ||||||| || || ||| Sbjct 10003809 TTCGAGCCGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTG 10003750 Query 124317 ATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGC 124376 | || ||||||||| || |||| | | | | |||| || || ||||| Sbjct 10003749 GTCAACCATCATTTGTTGCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAG 10003690 Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAACACGT 124435 ||| | || || || | | || | || | || ||| | | || || | | || Sbjct 10003689 AACCAGATCATATCGAGCAG-GGGATCGATTCAAAACATTGAGACCATACCCCAGAAGGT 10003631 Query 124436 -CAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATG 124490 | || | |||||||| || ||||||||||| | || | ||||||| ||||| Sbjct 10003630 GCGAG-ATCTGTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTA----AAATG 10003576 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAA 124550 |||| ||| || || |||| || ||||| ||||| || || ||| | ||| || || Sbjct 10003575 GCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAG 10003516 Query 124551 CCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAAC 124609 || | ||| | |||| ||||||| | || | |||| ||| || || ||||| Sbjct 10003515 CCAAACTATGGAAAGCTGACTTCCATACACTTTTACTCCTGGA-AAGCAGGTCTTAAAAC 10003457 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || ||||| || | | ||||| || || || |||||||||| || ||||| |||| Sbjct 10003456 CGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAACAA 10003397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451960152345240