Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1 327 1e-84
>seq1
Length=23539531
Score = 327 bits (362), Expect = 1e-84
Identities = 1163/1800 (65%), Gaps = 48/1800 (3%)
Strand=Plus/Minus
Query 122897 AAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACG 122956
|||| |||| || || || |||||||| |||||||| || || || | || |||
Sbjct 10005175 AAAGATCGCAGAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGA 10005116
Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016
|| ||||| || ||||| || || | |||| | | ||||| || ||
Sbjct 10005115 GGATATCGATGCAGCCGTGGAAACCTATAATCTTCTGTCGGAGCGCTACTTCACACATGC 10005056
Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076
||||| |||| ||||| | ||| || ||| |||||||| |||||||| | ||
Sbjct 10005055 ATCGCCCACACTGTTTGCCGCTGCCACAAACCGGCCGCAGTTGTCGTCGTGTTTCCTTCT 10004996
Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136
||| || | ||| |||| || || | | || || | ||||| ||||
Sbjct 10004995 GACCATGACGGCCGACTCCATCGAGGGCATTTTCAAGTCTGTGGAACAATGCGCCATGAT 10004936
Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196
||||| | | ||| ||||| || | |||||||| | | | | || | |
Sbjct 10004935 CTCCAAGTCCGCCGGTGGCATCGGACTCAACGTGCATTGCATTCGTGCAAAGGGCACCTC 10004876
Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256
|| | |||| | || | || ||| | | |||||||| | || | |||||
Sbjct 10004875 GATTTGCGGCACAAATGGTACTTCCAATGGGTTGGTTCCCATGCTGAGGGTCTTTAATAA 10004816
Query 123257 CGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCT 123313
| | || | || || ||||| |||||| ||| || || | || || |||||
Sbjct 10004815 TGTGGCTCGTTATGTGGATCAGGGAGGCGGCAAGCGCCCCGGTGCCTTTGCCATTTATCT 10004756
Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AATTTAAAACGCAACATGGGGGCGG 123372
||||| |||||| ||||| | || || | || | || | | |||| ||| |
Sbjct 10004755 GGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG-AACACGGGCAAAG 10004697
Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432
|||| || || |||||| |||| ||||| | ||| |||||||| | || ||| ||
Sbjct 10004696 AAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGATCTCTTCATGAAAC 10004637
Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCG 123492
|||| | | | |||| | |||||||||||||| ||| | |||||| || | ||
Sbjct 10004636 GCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGTCCAGGTCTCCACG 10004577
Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG------CA 123546
| || | ||| || | || || || |||||| | ||||||||| || || ||
Sbjct 10004576 AAGTGTGGGGCGATGAATTCGAAAAGCTGTACGAGAAATACGAGCAAGAGGGTCGGGCCA 10004517
Query 123547 AACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTCAAATTTATTATCGAAACACAA 123602
| | ||||| ||| || | | ||| |||| || || || | |||
Sbjct 10004516 ACCGAACGGTTA---AGGCTCAATCCCTGTGGTTTGCC-------ATCATTGAGGCGCAA 10004467
Query 123603 GTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG 123662
|| || ||||||| ||||||||||||| ||| ||||| ||||||||||| | ||| |||
Sbjct 10004466 GTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAG 10004407
Query 123663 AGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGAT 123722
|| | || || || || || || || | ||| | ||||| | ||||| |
Sbjct 10004406 CAGAATGTAGGCACCATTAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATATTCCTCA 10004347
Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCGTCG 123777
| ||| | | || || || || ||||| || || | | || |||| || ||
Sbjct 10004346 CCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATGTTCGTCACGCCG 10004287
Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATT 123837
| | | || | | ||||| | | |||||| | ||||| | || || |||
Sbjct 10004286 GAGAAGACG--TATGATTTCAAGAAGCTCAAGGAAGTCACAAAGATAGTTACCAAAAATC 10004229
Query 123838 TGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGA 123897
| ||||| || || ||| | |||| |||||| || || || | ||| |||||||
Sbjct 10004228 TAAACAAGATAATTGATATCAATTATTATCCGCTGCCAGAGGCAAGGAAGTCCAATTTGA 10004169
Query 123898 AACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCA 123957
|| | || || || | || ||||| || || || || || || | | ||||
Sbjct 10004168 GGCATCGTCCCGTGGGCATTGGTATTCAGGGATTCGCTGATGCCTTGATTCTCATGCGTT 10004109
Query 123958 TGCCGTACGAAAGCGACGAAGCAAAGTTGCTT-AATACGCAAATAGCCGAAACAATTTAT 124016
| |||||||||||||| ||||| || ||| ||| ||| ||| ||||| |||||
Sbjct 10004108 TCCCGTACGAAAGCGAAGAAGCCG-GTCTCTTGAATCAGCAGATATTTGAAACGATTTAC 10004050
Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076
|| ||||| ||||| || ||||||||||| || | | | || | ||||||| |||
Sbjct 10004049 TATGGCGCCTTGGAAGCCAGCTGCGAACTGGCCCAGACCGAAGGTCCATACGAAACCTAC 10003990
Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136
| ||||||||||| |||| ||| ||||||||||||||||||||| | || ||
Sbjct 10003989 GAGGGCAGCCCGGTGAGCAAAGGAATTTTGCAGTACGACATGTGGGACAAGGTGCCAACG 10003930
Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196
|| ||||||||||| || || | ||| || ||||||| | || |||||
Sbjct 10003929 AACCTGTGGGACTGGCAGAAATTGAAGGAGTCCATTAAGAAGCACGGTGTCCGGAACTCA 10003870
Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256
||| | || || |||||| || ||| | || ||||| || | || ||||| ||||||
Sbjct 10003869 CTGCTCGTTGCTCCCATGCCCACTGCATCTACAGCTCAGATAATGGGCAACAATGAATCC 10003810
Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316
|||||||||| ||| | || | ||| || ||||| | ||||||| || || |||
Sbjct 10003809 TTCGAGCCGTACACCACGAACATATACACCCGGCGAGTTCTGTCCGGCGAATTCCAGGTG 10003750
Query 124317 ATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGC 124376
| || ||||||||| || |||| | | | | |||| || || |||||
Sbjct 10003749 GTCAACCATCATTTGTTGCGCGACCTAACCGAACTGGACTTGTGGGACGACGACATGAAG 10003690
Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCG-TGCAGCGCATCGCTTCGATTCCGGAACACGT 124435
||| | || || || | | || | || | || ||| | | || || | | ||
Sbjct 10003689 AACCAGATCATATCGAGCAG-GGGATCGATTCAAAACATTGAGACCATACCCCAGAAGGT 10003631
Query 124436 -CAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATG 124490
| || | |||||||| || ||||||||||| | || | ||||||| |||||
Sbjct 10003630 GCGAG-ATCTGTACAAGACGGTGTGGGAAATCTCAGTCAAGTCCACGATTA----AAATG 10003576
Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAA 124550
|||| ||| || || |||| || ||||| ||||| || || ||| | ||| || ||
Sbjct 10003575 GCCGCCGATCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAACATACATGTGGCCGAG 10003516
Query 124551 CCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCAAAAC 124609
|| | ||| | |||| ||||||| | || | |||| ||| || || |||||
Sbjct 10003515 CCAAACTATGGAAAGCTGACTTCCATACACTTTTACTCCTGGA-AAGCAGGTCTTAAAAC 10003457
Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669
|| ||||| || | | ||||| || || || |||||||||| || ||||| ||||
Sbjct 10003456 CGGAATGTACTATCTGCGCACCAAGCCAGCTGCGAATGCCATTCAGTTCACCGTGAACAA 10003397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451960152345240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |