Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq2 127 3e-24 >seq1 Length=23539531 Score = 185 bits (204), Expect = 1e-41 Identities = 636/984 (65%), Gaps = 11/984 (1%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||| || ||||| ||||| ||| | |||||||| |||| || || ||||| || Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| || | ||| || ||| |||| ||| | | ||||| ||| Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 || | | |||||| | | | ||| | || |||||||| || |||| | Sbjct 10003904 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 10003963 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || |||| | | | || ||||| | || || ||||| || || || |||| | Sbjct 10003964 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGT 10004023 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| |||| || || | ||| | | || || || ||||| || | ||||| Sbjct 10004024 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGA 10004083 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 ||| || ||| || ||| || ||| | ||| || |||| |||| || || Sbjct 10004084 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 10004143 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATA 116321 | ||| | ||| | || ||||| |||| ||| ||||| | || ||| || ||||| Sbjct 10004144 ATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGC-CTCTGGCAGCGGATA 10004202 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 | |||| |||| || | | | |||||||||||||| || | |||||||| ||| | || Sbjct 10004203 ATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAG 10004262 Query 116382 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 ||| | | ||||| | | |||| |||| || | |||||||| || || Sbjct 10004263 CTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGC 10004319 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 || || || || | |||||||| | || || | |||||||| ||||| || Sbjct 10004320 CAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTT 10004379 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 | |||||||||||| | |||| || || ||| |||| || || |||||| | Sbjct 10004380 GCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10004439 Query 116562 GAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA--CATCG 116619 |||||| || || | || |||||| ||| | || | || || ||| | || | Sbjct 10004440 GAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG 10004499 Query 116620 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCA 116679 || || || |||||| || ||||| | |||||| || ||| || || Sbjct 10004500 --AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCG 10004557 Query 116680 AACTCTTC-ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCA 116738 || || || |||||| | || ||| ||||| ||| | || || | ||| ||||| Sbjct 10004558 AATTCATCGCCCCACA-CTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCA 10004616 Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798 | ||| |||| || || ||||||||||| || || ||||| || || | || || Sbjct 10004617 ATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAG 10004676 Query 116799 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858 ||| || |||| ||||| | ||| || || |||| || || | || Sbjct 10004677 ATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGAC 10004736 Query 116859 ATCCGCGTGCCACGGTTCCAGGTA 116882 ||||| |||||| |||||||| || Sbjct 10004737 ATCCGAGTGCCAGGGTTCCAGATA 10004760 Score = 116 bits (128), Expect = 5e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || || Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| | |||| | | | | |||| || || || || ||| || ||||| || || | Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||||||| | |||||||| | | | | ||| |||||||||| |||| Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| | Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855 Query 176166 C 176166 | Sbjct 18945856 C 18945856 >seq2 Length=21544594 Score = 127 bits (140), Expect = 3e-24 Identities = 283/420 (67%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288 ||| ||| | ||| ||| ||||| ||||| ||||| ||||| || ||||| ||||| Sbjct 8575034 GTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC--GATATCATCTCC 8575091 Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || | ||||||||| || | ||| | || || || || | || ||| | | Sbjct 8575092 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 8575151 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || |||| ||| |||||||||||| |||||| || ||||||| ||||| | || Sbjct 8575152 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG 8575211 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || |||| ||| ||||||| |||| || || || | ||| || Sbjct 8575212 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 8575271 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTC 127527 || | | | | | || ||| | || || ||| | ||| ||||| || Sbjct 8575272 ATGAT-GCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 8575330 Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587 ||| | |||||||| || ||||| || || || |||||| || || ||||| || Sbjct 8575331 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 8575390 Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||||| | ||||||||| | || ||| ||||||||| |||||||| Sbjct 8575391 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 8575450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613448771108040