Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1 185 1e-41
seq2 127 3e-24
>seq1
Length=23539531
Score = 185 bits (204), Expect = 1e-41
Identities = 636/984 (65%), Gaps = 11/984 (1%)
Strand=Plus/Plus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
|| ||||| || ||||| ||||| ||| | |||||||| |||| || || ||||| ||
Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| ||||||||||| || | ||| || ||| |||| ||| | | ||||| |||
Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903
Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082
|| | | |||||| | | | ||| | || |||||||| || |||| |
Sbjct 10003904 TTCAATTTCTGCCAGTCCCACAGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAA 10003963
Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142
|| |||| | | | || ||||| | || || ||||| || || || |||| |
Sbjct 10003964 ATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGT 10004023
Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202
||| |||| || || | ||| | | || || || ||||| || | |||||
Sbjct 10004024 TCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGA 10004083
Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262
||| || ||| || ||| || ||| | ||| || |||| |||| || ||
Sbjct 10004084 CCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGA 10004143
Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACGGGATA 116321
| ||| | ||| | || ||||| |||| ||| ||||| | || ||| || |||||
Sbjct 10004144 ATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGC-CTCTGGCAGCGGATA 10004202
Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381
| |||| |||| || | | | |||||||||||||| || | |||||||| ||| | ||
Sbjct 10004203 ATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAG 10004262
Query 116382 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441
||| | | ||||| | | |||| |||| || | |||||||| || ||
Sbjct 10004263 CTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGGAGGC 10004319
Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501
|| || || || | |||||||| | || || | |||||||| ||||| ||
Sbjct 10004320 CAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTT 10004379
Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561
| |||||||||||| | |||| || || ||| |||| || || |||||| |
Sbjct 10004380 GCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10004439
Query 116562 GAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA--CATCG 116619
|||||| || || | || |||||| ||| | || | || || ||| | || |
Sbjct 10004440 GAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGGATTG 10004499
Query 116620 GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCA 116679
|| || || |||||| || ||||| | |||||| || ||| || ||
Sbjct 10004500 --AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCG 10004557
Query 116680 AACTCTTC-ACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCA 116738
|| || || |||||| | || ||| ||||| ||| | || || | ||| |||||
Sbjct 10004558 AATTCATCGCCCCACA-CTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGACCA 10004616
Query 116739 TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAG 116798
| ||| |||| || || ||||||||||| || || ||||| || || | || ||
Sbjct 10004617 ATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAACAG 10004676
Query 116799 ATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGAT 116858
||| || |||| ||||| | ||| || || |||| || || | ||
Sbjct 10004677 ATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGAC 10004736
Query 116859 ATCCGCGTGCCACGGTTCCAGGTA 116882
||||| |||||| |||||||| ||
Sbjct 10004737 ATCCGAGTGCCAGGGTTCCAGATA 10004760
Score = 116 bits (128), Expect = 5e-21
Identities = 172/241 (71%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986
||||||||| ||| | | || || ||||||||||| | ||||||||| ||||| || ||
Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676
Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045
||| | |||| | | | | |||| || || || || ||| || ||||| || || |
Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735
Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105
|||| |||||||||||| | |||||||| | | | | ||| |||||||||| ||||
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165
|||| ||| | | ||| || | |||| ||||| | ||| ||||| | ||| |
Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855
Query 176166 C 176166
|
Sbjct 18945856 C 18945856
>seq2
Length=21544594
Score = 127 bits (140), Expect = 3e-24
Identities = 283/420 (67%), Gaps = 6/420 (1%)
Strand=Plus/Plus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATAT--TCTCC 127288
||| ||| | ||| ||| ||||| ||||| ||||| ||||| || ||||| |||||
Sbjct 8575034 GTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC--GATATCATCTCC 8575091
Query 127289 ATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || | ||||||||| || | ||| | || || || || | || ||| | |
Sbjct 8575092 ATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAA 8575151
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
|| |||| ||| |||||||||||| |||||| || ||||||| ||||| | ||
Sbjct 8575152 CGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG 8575211
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || |||| ||| ||||||| |||| || || || | ||| ||
Sbjct 8575212 ACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCG 8575271
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTC 127527
|| | | | | | || ||| | || || ||| | ||| ||||| ||
Sbjct 8575272 ATGAT-GCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTC 8575330
Query 127528 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 127587
||| | |||||||| || ||||| || || || |||||| || || ||||| ||
Sbjct 8575331 GCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAG 8575390
Query 127588 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647
||| |||||||| | ||||||||| | || ||| ||||||||| ||||||||
Sbjct 8575391 ACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 8575450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613448771108040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |