Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2 208 1e-48
seq1 199 6e-46
>seq2
Length=21544594
Score = 208 bits (230), Expect = 1e-48
Identities = 551/825 (67%), Gaps = 30/825 (4%)
Strand=Plus/Plus
Query 159631 CTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTC 159690
|| ||| | || ||| ||||| ||||||||||||||||| || |||| ||||| ||
Sbjct 8575031 CTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 8575090
Query 159691 CATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAA 159750
|||||| |||||||| || || ||| ||| || || | || | |||||
Sbjct 8575091 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 8575150
Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCT 159810
| ||| || || || || ||||| ||||| | || ||||| || || | || |
Sbjct 8575151 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATT 8575210
Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG 159870
||||| || || || | || ||||||| |||||| | ||||| ||| | ||||
Sbjct 8575211 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT- 8575269
Query 159871 CGA-GACACGTTCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-C 159927
||| || || ||| | || | || || | ||| || |||| || |||| |
Sbjct 8575270 CGATGATGCGCTCGCGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGC 8575324
Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987
|||||||||||||| |||||||| |||||||| | ||||||||| | | | | || ||
Sbjct 8575325 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 8575384
Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCC 160047
||| | || ||| || ||||| ||||||| || || ||||| || ||||| ||
Sbjct 8575385 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCC 8575444
Query 160048 CTCCACGGCCGCAAACGCCACGAGCCTCTCACC-AAAAGAGGCG--TTGGTGTCATG-GG 160103
||||||||| ||||| || | || | ||| || ||| || || |||| | | |
Sbjct 8575445 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGG----ACGAGA 8575500
Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCG 160159
|||| |||||| || ||| ||||| | || |||||| |||| |||
Sbjct 8575501 TCCAGGACAGGGCCCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 8575556
Query 160160 TTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219
|| |||| || ||| | |||| ||| ||| | |||| ||||
Sbjct 8575557 TTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTAC 8575616
Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AG 160278
|| || | |||||| || || ||||| ||||| ||| |||||| || |||||| |
Sbjct 8575617 ATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTG 8575676
Query 160279 ATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGC 160338
|| |||||||||||| |||| | | |||| || | || || | || || | |||
Sbjct 8575677 AT-CTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGC 8575735
Query 160339 CGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTC 160398
|||||||| |||| |||||| ||||||||||| | |||||| | || || | |
Sbjct 8575736 GGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTG 8575792
Query 160399 CCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443
||||| || | ||| | || |||||| ||||| || || ||||
Sbjct 8575793 CCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCA 8575837
>seq1
Length=23539531
Score = 199 bits (220), Expect = 6e-46
Identities = 471/695 (68%), Gaps = 26/695 (4%)
Strand=Plus/Plus
Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891
||| | |||||| ||| |||||||||||||| ||| | || ||| || | | ||||||||
Sbjct 10003389 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGT 10003448
Query 203892 ACATGCCGGTCTTTAGGCCCTTC-TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950
|||| ||||| |||| | ||| | | ||| ||| | ||| ||||||| ||| || |
Sbjct 10003449 ACATTCCGGT-TTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCA 10003507
Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010
||| || ||||||| || ||||| | ||||| || || || ||||| | | |||
Sbjct 10003508 TAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGA 10003567
Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070
|| |||||||| || || ||| ||| || || ||||||||||||||| ||| |||
Sbjct 10003568 TCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCT 10003627
Query 204071 CTGGTGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128
| | || || | ||| | | || || ||||| || || | || | ||
Sbjct 10003628 CGCACCTTCTGGGGTATGGTCT--CAATGTTTTGAATCGATCCCCTGCTCGATATGA-TC 10003684
Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187
| || || | || || |||||| | ||| | | || || |||| || || ||
Sbjct 10003685 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGG 10003744
Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247
|||| | ||| || || |||||||| || | |||||| | | ||| ||||| | ||
Sbjct 10003745 TTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGC 10003804
Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307
||||| | || |||||||| | |||||||| || || |||||||||||||| | |
Sbjct 10003805 TCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACG 10003864
Query 204308 AGCAGGGAGTTGCGCACACCG----TATTTTTGGAC-CCTGC-GCTTCAGAGAGGTCCAG 204361
||||| ||||| || |||||| | || ||||| ||| | ||| | || |||
Sbjct 10003865 AGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCAC 10003924
Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACT 204421
|| ||| | || | | ||||||||||| |||| || || |||| || ||
Sbjct 10003925 AGGT---TCG---TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACC 10003978
Query 204422 GGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTC-TTCT--GCCAGCTTGCACGAGGCG 204478
|||||||||| ||| || || | || | || ||| ||||| | ||| |||
Sbjct 10003979 GGGCTGCCCTCGTAGGTTTCGTATG---GACCTTCGGTCTGGGCCAGTTCGCAGCTGGCT 10004035
Query 204479 GCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513
||| |||| |||||| || || ||||| |||||
Sbjct 10004036 TCCAAGGCGCCATAGTAAATCGTTTCAAATATCTG 10004070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795079471406640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |