Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 208 1e-48 seq1 199 6e-46 >seq2 Length=21544594 Score = 208 bits (230), Expect = 1e-48 Identities = 551/825 (67%), Gaps = 30/825 (4%) Strand=Plus/Plus Query 159631 CTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTC 159690 || ||| | || ||| ||||| ||||||||||||||||| || |||| ||||| || Sbjct 8575031 CTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTC 8575090 Query 159691 CATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAA 159750 |||||| |||||||| || || ||| ||| || || | || | ||||| Sbjct 8575091 CATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAA 8575150 Query 159751 CCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCT 159810 | ||| || || || || ||||| ||||| | || ||||| || || | || | Sbjct 8575151 ACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATT 8575210 Query 159811 AACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTG 159870 ||||| || || || | || ||||||| |||||| | ||||| ||| | |||| Sbjct 8575211 GACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCT- 8575269 Query 159871 CGA-GACACGTTCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-C 159927 ||| || || ||| | || | || || | ||| || |||| || |||| | Sbjct 8575270 CGATGATGCGCTCGCGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGC 8575324 Query 159928 AAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGG 159987 |||||||||||||| |||||||| |||||||| | ||||||||| | | | | || || Sbjct 8575325 AAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGG 8575384 Query 159988 CATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCC 160047 ||| | || ||| || ||||| ||||||| || || ||||| || ||||| || Sbjct 8575385 CATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCC 8575444 Query 160048 CTCCACGGCCGCAAACGCCACGAGCCTCTCACC-AAAAGAGGCG--TTGGTGTCATG-GG 160103 ||||||||| ||||| || | || | ||| || ||| || || |||| | | | Sbjct 8575445 CTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGG----ACGAGA 8575500 Query 160104 TCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCG 160159 |||| |||||| || ||| ||||| | || |||||| |||| ||| Sbjct 8575501 TCCAGGACAGGGCCCAGTCTGCC----TTGCGCTTCACAGCCGGCATCGTTTCGATAGCG 8575556 Query 160160 TTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTAC 160219 || |||| || ||| | |||| ||| ||| | |||| |||| Sbjct 8575557 TTGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTAC 8575616 Query 160220 ATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AG 160278 || || | |||||| || || ||||| ||||| ||| |||||| || |||||| | Sbjct 8575617 ATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTG 8575676 Query 160279 ATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGC 160338 || |||||||||||| |||| | | |||| || | || || | || || | ||| Sbjct 8575677 AT-CTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGC 8575735 Query 160339 CGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTC 160398 |||||||| |||| |||||| ||||||||||| | |||||| | || || | | Sbjct 8575736 GGCAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGGC---GGTG 8575792 Query 160399 CCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||||| || | ||| | || |||||| ||||| || || |||| Sbjct 8575793 CCAGTCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCA 8575837 >seq1 Length=23539531 Score = 199 bits (220), Expect = 6e-46 Identities = 471/695 (68%), Gaps = 26/695 (4%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||||| ||| |||||||||||||| ||| | || ||| || | | |||||||| Sbjct 10003389 CCTGCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGT 10003448 Query 203892 ACATGCCGGTCTTTAGGCCCTTC-TGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 |||| ||||| |||| | ||| | | ||| ||| | ||| ||||||| ||| || | Sbjct 10003449 ACATTCCGGT-TTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCA 10003507 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGA 204010 ||| || ||||||| || ||||| | ||||| || || || ||||| | | ||| Sbjct 10003508 TAGTTTGGCTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGA 10003567 Query 204011 TCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCT 204070 || |||||||| || || ||| ||| || || ||||||||||||||| ||| ||| Sbjct 10003568 TCGGCGGCCATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCT 10003627 Query 204071 CTGGTGTGTTGAGGCA-CATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC 204128 | | || || | ||| | | || || ||||| || || | || | || Sbjct 10003628 CGCACCTTCTGGGGTATGGTCT--CAATGTTTTGAATCGATCCCCTGCTCGATATGA-TC 10003684 Query 204129 T-CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | || || | || || |||||| | ||| | | || || |||| || || || Sbjct 10003685 TGGTTCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGG 10003744 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 |||| | ||| || || |||||||| || | |||||| | | ||| ||||| | || Sbjct 10003745 TTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGC 10003804 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 ||||| | || |||||||| | |||||||| || || |||||||||||||| | | Sbjct 10003805 TCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACG 10003864 Query 204308 AGCAGGGAGTTGCGCACACCG----TATTTTTGGAC-CCTGC-GCTTCAGAGAGGTCCAG 204361 ||||| ||||| || |||||| | || ||||| ||| | ||| | || ||| Sbjct 10003865 AGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCAC 10003924 Query 204362 TCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACT 204421 || ||| | || | | ||||||||||| |||| || || |||| || || Sbjct 10003925 AGGT---TCG---TTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACC 10003978 Query 204422 GGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTC-TTCT--GCCAGCTTGCACGAGGCG 204478 |||||||||| ||| || || | || | || ||| ||||| | ||| ||| Sbjct 10003979 GGGCTGCCCTCGTAGGTTTCGTATG---GACCTTCGGTCTGGGCCAGTTCGCAGCTGGCT 10004035 Query 204479 GCCATGGCGTGATAGTACATGGTCTCAAAGATCTG 204513 ||| |||| |||||| || || ||||| ||||| Sbjct 10004036 TCCAAGGCGCCATAGTAAATCGTTTCAAATATCTG 10004070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795079471406640