Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq9 141 1e-28
seq1 136 4e-27
seq3570 134 2e-26
seq4 105 8e-18
seq671 100 3e-16
>seq9
Length=20829647
Score = 141 bits (156), Expect = 1e-28
Identities = 149/196 (76%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 5792504 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 5792563
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 5792564 AATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 5792623
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || |||||
Sbjct 5792624 CTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAAC 5792683
Query 46582 AAAGATTTGCATTTTG 46597
|| |||||||| |||
Sbjct 5792684 GAAAATTTGCATATTG 5792699
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 5792276 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 5792335
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 5792336 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 5792395
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || || ||
Sbjct 5792396 CTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 5792455
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 5792456 GAAGATCTGCAT 5792467
>seq1
Length=23539531
Score = 136 bits (150), Expect = 4e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| ||||| ||||||||||| |||||||| | || ||
Sbjct 4075125 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 4075066
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||||| |||| |||||||| || | || | || |||||| |||
Sbjct 4075065 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 4075006
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||||| || | | ||||| | ||||| |||| |||||||| ||
Sbjct 4075005 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 4074946
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || ||||| || ||||| |||||
Sbjct 4074945 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 93.3 bits (102), Expect = 5e-14
Identities = 149/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||||| |||| || |||||| || || || ||||| || || ||||| | || ||
Sbjct 10088925 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 10088866
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||| ||||| |||| |||||||| || | || | | || ||||||
Sbjct 10088865 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 10088806
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | | | || || || ||| || || | |||||||| ||
Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||||| || || ||||| ||||| ||||| |||
Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 10088712
>seq3570
Length=216
Score = 134 bits (148), Expect = 2e-26
Identities = 145/192 (76%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 198 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 139
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| |||||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 138 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 79
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || |||| |||||||| ||||| ||||| || || ||
Sbjct 78 CTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 19
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 18 GAAGATCTGCAT 7
>seq4
Length=24153973
Score = 105 bits (116), Expect = 8e-18
Identities = 141/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || || ||||||||||||||
Sbjct 3789636 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3789695
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | | |||||| ||| ||||| ||| | |
Sbjct 3789696 GATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATT 3789755
Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578
| | | ||||| |||| || || |||| |||||||| ||||| || || || ||
Sbjct 3789756 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTT 3789812
Query 46579 AACAAAGATTTGCAT 46593
|| ||||| |||||
Sbjct 3789813 CACGAAGATCTGCAT 3789827
>seq671
Length=216
Score = 100 bits (110), Expect = 3e-16
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || ||||||||||||||||||||
Sbjct 47 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAA 106
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | | ||||||||| |||||| ||| | |
Sbjct 107 GATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 166
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571
| | | ||||| | || || |||| |||||||| || || ||||
Sbjct 167 CTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCA 216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565184568107880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |