Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 141 1e-28 seq1 136 4e-27 seq3570 134 2e-26 seq4 105 8e-18 seq671 100 3e-16 >seq9 Length=20829647 Score = 141 bits (156), Expect = 1e-28 Identities = 149/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 5792504 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 5792563 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 5792564 AATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 5792623 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || ||||| Sbjct 5792624 CTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAAC 5792683 Query 46582 AAAGATTTGCATTTTG 46597 || |||||||| ||| Sbjct 5792684 GAAAATTTGCATATTG 5792699 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 5792276 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 5792335 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 5792336 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 5792395 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 5792396 CTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCAC 5792455 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 5792456 GAAGATCTGCAT 5792467 >seq1 Length=23539531 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||||||||| |||||||| | || || Sbjct 4075125 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 4075066 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||| || | || | || |||||| ||| Sbjct 4075065 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 4075006 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||||| || | | ||||| | ||||| |||| |||||||| || Sbjct 4075005 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 4074946 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 4074945 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| || || || ||||| || || ||||| | || || Sbjct 10088925 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 10088866 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| ||||| |||| |||||||| || | || | | || |||||| Sbjct 10088865 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 10088806 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | || || || ||| || || | |||||||| || Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||| || || ||||| ||||| ||||| ||| Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 10088712 >seq3570 Length=216 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| || |||||||| |||||||| Sbjct 198 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 139 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| |||||||| || | || | | |||||||||| |||||| ||||| | Sbjct 138 GATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 79 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | || || |||| |||||||| ||||| ||||| || || || Sbjct 78 CTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTCAC 19 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 18 GAAGATCTGCAT 7 >seq4 Length=24153973 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| |||| || || |||||||||||||| Sbjct 3789636 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAA 3789695 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | |||||| ||| ||||| ||| | | Sbjct 3789696 GATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTTGGCCTTCACATT 3789755 Query 46522 CGCCACCGTGTCGCTCGAT---TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || |||| |||||||| ||||| || || || || Sbjct 3789756 CTCAATGGTGTC---CGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGAGTCTT 3789812 Query 46579 AACAAAGATTTGCAT 46593 || ||||| ||||| Sbjct 3789813 CACGAAGATCTGCAT 3789827 >seq671 Length=216 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || |||||||||||||||||||| Sbjct 47 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAA 106 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||| || | || | | ||||||||| |||||| ||| | | Sbjct 107 GATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATT 166 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | ||||| | || || |||| |||||||| || || |||| Sbjct 167 CTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTTTCCGGTCA 216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565184568107880