Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2 459 3e-124
seq9 141 9e-29
seq1 136 4e-27
seq4 127 2e-24
seq3570 123 2e-23
seq671 96.9 3e-15
>seq2
Length=21544594
Score = 459 bits (508), Expect = 3e-124
Identities = 595/815 (73%), Gaps = 8/815 (1%)
Strand=Plus/Plus
Query 132617 CCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCA 132676
||||||| || || ||||| || || ||||| |||| || || | | ||| || | |
Sbjct 8575042 CCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAA 8575101
Query 132677 AGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCA 132736
| ||||| ||||||||| ||| || || || ||||||| | ||| || |
Sbjct 8575102 ATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTA 8575161
Query 132737 CGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCG 132796
||||||| ||||| || ||||| ||||| || | || | || | || ||||| |
Sbjct 8575162 CGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGG 8575221
Query 132797 CTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCG 132856
| |||||||| || ||||| ||||| ||||||||| || ||| || | | ||||
Sbjct 8575222 CATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCT 8575281
Query 132857 CCGCGCTCGGC-CGTTGCACCAAATGCTTGAACATCAAGCAAG-CAAAGTCGCAATGCAA 132914
| ||||| || || ||||||| |||| |||||||| ||| | |||||||||| |||||
Sbjct 8575282 C-GCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAGTCGCAGTGCAA 8575339
Query 132915 GCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTT 132974
||||||||| | || || || |||||| ||| ||||| || ||||| || ||||| ||
Sbjct 8575340 GCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTT 8575399
Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034
|| ||||| || |||| |||||| ||||| ||||||| |||||| ||||| || ||
Sbjct 8575400 CTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAA 8575459
Query 133035 AGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTC 133094
|| | | |||||| ||||| | || ||| | ||||||| ||| ||||| ||
Sbjct 8575460 GGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAGTC 8575519
Query 133095 GGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC 133154
||||| || || ||||||||||||||| ||||| ||| | | | | || ||
Sbjct 8575520 TGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC--AGGTACTCTCGCTGG 8575577
Query 133155 CGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212
| ||| || | ||| |||||||| | ||||| |||||||| |||||||||
Sbjct 8575578 TGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCC 8575637
Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272
|||||||| || |||||||| ||||| || ||||| | |||||| || ||| |||
Sbjct 8575638 ATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAT 8575697
Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332
||||| ||||| || ||||| |||||||| || |||||| || |||||||||||||||
Sbjct 8575698 CGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGC 8575757
Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392
||||||||||||||||| ||| |||| ||| | |||||| |||||||||||
Sbjct 8575758 GAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAA 8575817
Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
|||||||||||||||||||| || || ||||| ||
Sbjct 8575818 TCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 8575852
>seq9
Length=20829647
Score = 141 bits (156), Expect = 9e-29
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| |||||||| ||||| || || || || ||||| ||||||||| | || |||||| |
Sbjct 5792698 AATATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCA 5792639
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
|||| | | | | | | || | || |||| ||||| |||||||| ||| | ||
Sbjct 5792638 TCCGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 5792579
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| | |||| ||| || || |||||||| |||| ||||| || |||||||
Sbjct 5792578 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTAC 5792519
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| ||||| |||| || || ||||| |||||| || | || |||
Sbjct 5792518 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 5792468
Score = 127 bits (140), Expect = 2e-24
Identities = 167/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| |||||||| | || || ||| | ||
Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 5792408
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || | || |||| ||||| |||||||| ||| | || ||
Sbjct 5792407 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 5792349
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || |||||||| |||| ||||| || |||||||||
Sbjct 5792348 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 5792289
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||| ||||| |||| || || ||||| |||||| || | || |||
Sbjct 5792288 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGGC 5792240
>seq1
Length=23539531
Score = 136 bits (150), Expect = 4e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | |
Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| || || ||||| |||||| | || ||
Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| |||||||| || | ||||| || ||||||||||
Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| ||||| |||| ||||| |||||||| ||
Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCG 4075130
Score = 123 bits (136), Expect = 2e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || ||||||||||| |||||||| | || ||||| |
Sbjct 10088713 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 10088772
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| || | | ||| | |||| || || | |||||||| |||||||| | ||
Sbjct 10088773 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10088832
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | ||| ||||| |||||||| || | ||||||||| |||||
Sbjct 10088833 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 10088892
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||| || ||||| | || ||||| |||||||| ||
Sbjct 10088893 AACATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCG 10088930
>seq4
Length=24153973
Score = 127 bits (140), Expect = 2e-24
Identities = 241/351 (69%), Gaps = 9/351 (3%)
Strand=Plus/Plus
Query 107472 ATTCCGATAATGCCGCACGCGAGCCGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGA 107531
|| || |||| |||||| ||| ||| | || | |||||| || | |||||||| |
Sbjct 10847780 ATGCCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCG 10847839
Query 107532 TGGTCGGTGAGGCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATG 107591
|| | |||| ||||| || || | ||||||||| | | ||||||||||||
Sbjct 10847840 TGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATG 10847899
Query 107592 CTGTGCGGGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCG 107651
|||| | |||| | | || | | ||| || | | | |||| |||| | ||||
Sbjct 10847900 CTGTCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGTCG 10847959
Query 107652 CGGCCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCG 107711
| | ||| | | ||||||||| ||||| | ||| | | ||||| || |||| |||
Sbjct 10847960 CCGGTGGCC---TCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCG 10848016
Query 107712 CCGTGGTCGCGCTT--CGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTC 107768
||||| || ||| | | ||||||||| ||| |||| |||| ||||||| ||| |
Sbjct 10848017 CCGTGCTC---CTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTG 10848073
Query 107769 GCGTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCG 107819
||| || ||||||||||||||||| ||||| || || | |||||||
Sbjct 10848074 TTGTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACCCTTGGCCAGGCCG 10848124
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| |||||||| | || || ||| | |
Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || || | || || |||||||| ||| | || ||
Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | ||| ||||| || ||||| |||| |||||||| ||| ||||||
Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| | || || || |||||||| |||
Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGT 3789612
>seq3570
Length=216
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| ||||||||| | || |||||| | ||
Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 66
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|| | | | | |||| | || | || |||| ||||| |||||||| ||| | || ||
Sbjct 67 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 125
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| || || |||||||| |||| ||||| || |||||||||
Sbjct 126 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 185
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452
|||||| ||||| |||| || || |||||
Sbjct 186 CATCCAGAAGGAGTCGACCCTTCACTTGGT 215
>seq671
Length=216
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327
|| || || ||||||||| | || || ||| | | |||| | | | | | || |
Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||||||||| | || || ||||| || || | ||| |||||
Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || || | ||||| || |||||||||||||| ||||| |||| || ||
Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35
Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470
||||| || ||| || | || ||
Sbjct 34 TTGGTTCTCCGTCTGCGTGGTGG 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500125164792960
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