Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 459 3e-124 seq9 141 9e-29 seq1 136 4e-27 seq4 127 2e-24 seq3570 123 2e-23 seq671 96.9 3e-15 >seq2 Length=21544594 Score = 459 bits (508), Expect = 3e-124 Identities = 595/815 (73%), Gaps = 8/815 (1%) Strand=Plus/Plus Query 132617 CCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCA 132676 ||||||| || || ||||| || || ||||| |||| || || | | ||| || | | Sbjct 8575042 CCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAA 8575101 Query 132677 AGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCA 132736 | ||||| ||||||||| ||| || || || ||||||| | ||| || | Sbjct 8575102 ATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGTCCGCTA 8575161 Query 132737 CGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGCACCGGCAGCG 132796 ||||||| ||||| || ||||| ||||| || | || | || | || ||||| | Sbjct 8575162 CGAACTCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGG 8575221 Query 132797 CTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCG 132856 | |||||||| || ||||| ||||| ||||||||| || ||| || | | |||| Sbjct 8575222 CATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCT 8575281 Query 132857 CCGCGCTCGGC-CGTTGCACCAAATGCTTGAACATCAAGCAAG-CAAAGTCGCAATGCAA 132914 | ||||| || || ||||||| |||| |||||||| ||| | |||||||||| ||||| Sbjct 8575282 C-GCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAGTCGCAGTGCAA 8575339 Query 132915 GCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTT 132974 ||||||||| | || || || |||||| ||| ||||| || ||||| || ||||| || Sbjct 8575340 GCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTT 8575399 Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034 || ||||| || |||| |||||| ||||| ||||||| |||||| ||||| || || Sbjct 8575400 CTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAA 8575459 Query 133035 AGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTC 133094 || | | |||||| ||||| | || ||| | ||||||| ||| ||||| || Sbjct 8575460 GGCGATGATGCGCTCCCCGAAATTAGCCGACTTGGACGAGATCCAGGACAGGGCCCAGTC 8575519 Query 133095 GGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTC 133154 ||||| || || ||||||||||||||| ||||| ||| | | | | || || Sbjct 8575520 TGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAAC--AGGTACTCTCGCTGG 8575577 Query 133155 CGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 | ||| || | ||| |||||||| | ||||| |||||||| ||||||||| Sbjct 8575578 TGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCC 8575637 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 |||||||| || |||||||| ||||| || ||||| | |||||| || ||| ||| Sbjct 8575638 ATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAT 8575697 Query 133273 CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 ||||| ||||| || ||||| |||||||| || |||||| || ||||||||||||||| Sbjct 8575698 CGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGC 8575757 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 ||||||||||||||||| ||| |||| ||| | |||||| ||||||||||| Sbjct 8575758 GAGATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAA 8575817 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||||||||||||||||| || || ||||| || Sbjct 8575818 TCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 8575852 >seq9 Length=20829647 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || || ||||| ||||||||| | || |||||| | Sbjct 5792698 AATATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCA 5792639 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | | | || | || |||| ||||| |||||||| ||| | || Sbjct 5792638 TCCGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAT 5792579 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | |||| ||| || || |||||||| |||| ||||| || ||||||| Sbjct 5792578 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTAC 5792519 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| |||| || || ||||| |||||| || | || ||| Sbjct 5792518 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 5792468 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| |||||||| | || || ||| | || Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCC 5792408 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| |||||||| ||| | || || Sbjct 5792407 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 5792349 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 5792348 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 5792289 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || || ||||| |||||| || | || ||| Sbjct 5792288 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTGCGTCTGCGCGGTGGC 5792240 >seq1 Length=23539531 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || ||||| |||||| | || || Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| ||||| |||||||| || Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCG 4075130 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| | Sbjct 10088713 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 10088772 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || || | |||||||| |||||||| | || Sbjct 10088773 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10088832 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 10088833 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 10088892 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||||| | || ||||| |||||||| || Sbjct 10088893 AACATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCG 10088930 >seq4 Length=24153973 Score = 127 bits (140), Expect = 2e-24 Identities = 241/351 (69%), Gaps = 9/351 (3%) Strand=Plus/Plus Query 107472 ATTCCGATAATGCCGCACGCGAGCCGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGA 107531 || || |||| |||||| ||| ||| | || | |||||| || | |||||||| | Sbjct 10847780 ATGCCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCG 10847839 Query 107532 TGGTCGGTGAGGCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATG 107591 || | |||| ||||| || || | ||||||||| | | |||||||||||| Sbjct 10847840 TGTCCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATG 10847899 Query 107592 CTGTGCGGGCCGTACAAAGTCACGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTCG 107651 |||| | |||| | | || | | ||| || | | | |||| |||| | |||| Sbjct 10847900 CTGTCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGTCG 10847959 Query 107652 CGGCCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGCG 107711 | | ||| | | ||||||||| ||||| | ||| | | ||||| || |||| ||| Sbjct 10847960 CCGGTGGCC---TCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCG 10848016 Query 107712 CCGTGGTCGCGCTT--CGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCTC 107768 ||||| || ||| | | ||||||||| ||| |||| |||| ||||||| ||| | Sbjct 10848017 CCGTGCTC---CTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTG 10848073 Query 107769 GCGTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCCG 107819 ||| || ||||||||||||||||| ||||| || || | ||||||| Sbjct 10848074 TTGTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACCCTTGGCCAGGCCG 10848124 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || || ||| | | Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGAGCCATCG 3789768 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || || |||||||| ||| | || || Sbjct 3789767 GACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 3789708 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| || ||||| |||| |||||||| ||| |||||| Sbjct 3789707 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 3789648 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| | || || || |||||||| ||| Sbjct 3789647 ATCCAGAAGGAGTCAACCCTTCACTTGGTGCTCCGT 3789612 >seq3570 Length=216 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| | || Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 66 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| |||||||| ||| | || || Sbjct 67 GATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCA 125 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| |||| ||||| || ||||||||| Sbjct 126 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAA 185 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||||| ||||| |||| || || ||||| Sbjct 186 CATCCAGAAGGAGTCGACCCTTCACTTGGT 215 >seq671 Length=216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAA 38327 || || || ||||||||| | || || ||| | | |||| | | | | | || | Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGGCT 155 Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||||||||| | || || ||||| || || | ||| ||||| Sbjct 154 AAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 95 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || || | ||||| || |||||||||||||| ||||| |||| || || Sbjct 94 CAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCAC 35 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| || | || || Sbjct 34 TTGGTTCTCCGTCTGCGTGGTGG 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500125164792960