Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 8e-18
seq9 98.7 4e-15
seq671 86.0 2e-11
>seq1
Length=23539531
Score = 107 bits (118), Expect = 8e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | || |||||||| || || || || || || || |||||||| || ||| | ||
Sbjct 10088716 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 10088775
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | ||| || ||||| || || |||||||||||||| |||||
Sbjct 10088776 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 10088835
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | || ||| | || || || || |||||||| | || | | || |||||
Sbjct 10088836 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 10088895
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
||| | ||||| | || || ||||| ||
Sbjct 10088896 ATTCAGAAGGAGTCCACTCTGCACTTGGT 10088924
>seq9
Length=20829647
Score = 98.7 bits (108), Expect = 4e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||||||||| || ||||| || || || || || | || || || ||||
Sbjct 5792695 ATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGAGCCATCC 5792636
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| |||||| | | || || || || || ||||| ||||| || || |||||
Sbjct 5792635 GATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 5792576
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||||| |||||| | || || || || || || ||| | ||| || | || || ||
Sbjct 5792575 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACAAC 5792516
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258
|| | ||||| | || |||||||| ||
Sbjct 5792515 ATCCAGAAGGAGTCGACCCTTCACTTGGT 5792487
>seq671
Length=216
Score = 86.0 bits (94), Expect = 2e-11
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 391072 TGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAAC 391131
|||| || || || || || || || ||||| |||| || | |||||| | | ||
Sbjct 216 TGACCGGAAAGACCATCACCCTGGAAGTTGAGCCATCAGACACCATTGAGAATGTGAAGG 157
Query 391132 AAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGA 391191
|| || ||||| ||||| ||||||||||| ||||| || ||| | || ||| | || |
Sbjct 156 CTAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCA 97
Query 391192 AACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTC 391251
| || || || |||||| | ||| | | || || || || | ||||| | || ||||
Sbjct 96 AGCAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTC 37
Query 391252 ACTTAGT 391258
|||| ||
Sbjct 36 ACTTGGT 30
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975525533456852
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |