Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 123 2e-22 seq4 96.9 3e-14 seq9 89.7 4e-12 >seq5 Length=27160941 Score = 123 bits (136), Expect = 2e-22 Identities = 453/705 (64%), Gaps = 6/705 (1%) Strand=Plus/Plus Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || || || || ||||| |||| | |||| ||| | ||| | | Sbjct 10158156 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10158215 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||| | || || || | |||| | | ||||| ||| || || |||| | Sbjct 10158216 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10158275 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || || ||||| || || ||| | || || || ||||| || || | |||| Sbjct 10158276 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10158335 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || ||||| || || || || || | || ||||| ||||| || || |||| || || Sbjct 10158336 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10158395 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | || || ||||| || || || || || || || || || | || Sbjct 10158396 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10158455 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || || || | ||| || || || | ||||| || | | | ||| || || Sbjct 10158456 ACGGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10158515 Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430 || | || |||||| | | ||| || | | || | || || | | || || Sbjct 10158516 ATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10158574 Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-- 518488 | | | | | || | || ||||||| ||||| || || || ||| || Sbjct 10158575 GCCATCGGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10158632 Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548 |||| || | | |||||| || || || || || || || || | ||| || || || Sbjct 10158633 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10158692 Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 518608 || | || | ||||| |||||||| |||||| | || || || || || | |||||| Sbjct 10158693 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10158752 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 518668 |||||||| || |||||||| || || || || || || || || || |||| || | Sbjct 10158753 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10158812 Query 518669 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || || || || | || || || ||||||||||||| |||| Sbjct 10158813 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10158857 >seq4 Length=24153973 Score = 96.9 bits (106), Expect = 3e-14 Identities = 269/413 (65%), Gaps = 0/413 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 || |||||||| || || ||||||||||| | ||||| || || || | || || || Sbjct 13641493 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 13641434 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||| ||||| || | | | ||| | ||||| | || ||||| Sbjct 13641433 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCCCGC 13641374 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | || ||||||||||| | |||||| || | | || || || | |||| Sbjct 13641373 GTCATCGCCCGCTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13641314 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || ||||| | | | || || || || || ||||| || | ||| | ||||| Sbjct 13641313 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGTGTGGTC 13641254 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | ||||| || || || | ||| ||||| |||||||||||||| | |||| | | Sbjct 13641253 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13641194 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | || | | || || | ||| || || || || || | ||||||||||| Sbjct 13641193 TCCTGCACTGCCTCCGATGTATCGCCATGGAGGATGGCAGCCTGCACTGCAGCACCATAG 13641134 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671 || || || ||||| ||||||| | | ||||| | || || ||||| || Sbjct 13641133 GCCACCGCCTCATCGGGATTAATGGACTTGTTTAGATCCTTGCCGTTGAAGAA 13641081 >seq9 Length=20829647 Score = 89.7 bits (98), Expect = 4e-12 Identities = 202/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| || || ||||||||||| | ||||| || || || || | ||| Sbjct 11066182 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11066241 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | ||| | || | | || || | ||||| ||| || || |||| ||| || | Sbjct 11066242 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11066301 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 ||| || ||| ||| | | | | || || || ||||| || |||| ||| |||||||| Sbjct 11066302 AAGCACGTTC--TTC-TCGCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11066358 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 ||||| || || || | || || | ||||| ||||| || ||||| || ||||| Sbjct 11066359 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATCACACCAGCATCCTTGGTGGC 11066418 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318 || | || | |||||| || || || || || |||| ||||||| || | |||||| Sbjct 11066419 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11066478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780444320123014