Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq5 123 2e-22
seq4 96.9 3e-14
seq9 89.7 4e-12
>seq5
Length=27160941
Score = 123 bits (136), Expect = 2e-22
Identities = 453/705 (64%), Gaps = 6/705 (1%)
Strand=Plus/Plus
Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071
|| || ||||| || || || || ||||| |||| | |||| ||| | ||| | |
Sbjct 10158156 GTGACTAGACGGTTGTCGAAGTCCTCACCACCCAGATGCGTATCTCCGGCCGTGGACTTG 10158215
Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131
|| | ||| | || || || | |||| | | ||||| ||| || || |||| |
Sbjct 10158216 ACCTCGAAGATACCGTCATCGATCGACAGGATGGACACATCGAAGGTGCCGCCGCCCAGA 10158275
Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191
|| || ||||| || || ||| | || || || ||||| || || | ||||
Sbjct 10158276 TCGAAGATAAGCACGTTGCGCTCTCCAACAGCCTTCTTGTCCAGACCGTAAGCGATAGCA 10158335
Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251
|| ||||| || || || || || | || ||||| ||||| || || |||| || ||
Sbjct 10158336 GCGGCAGTGGGCTCGTTGATGATACGCAGCACATTCAGACCGGCGATGGTTCCGGCGTCC 10158395
Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311
|| || || || | || || ||||| || || || || || || || || || | ||
Sbjct 10158396 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAGGCCGGCACGGTGATGACAGCGTTGGTC 10158455
Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371
|| || || | ||| || || || | ||||| || | | | ||| || ||
Sbjct 10158456 ACGGTCTTGCCCAGATAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGCACCATCGAGGAG 10158515
Query 518372 ATTTGTTCTGGGGAATATTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT 518430
|| | || |||||| | | ||| || | | || | || || | | || ||
Sbjct 10158516 ATCTCCTC-GGGGAAGAAGGTCTTCTTCTCGTCCTTGTAGGTCACCTCGATCTTGGGCTT 10158574
Query 518431 ATTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG-- 518488
| | | | | || | || ||||||| ||||| || || || ||| ||
Sbjct 10158575 GCCATCGGCGCTGACCACCTCGAAGGGCCAGTGCTTCATGTCAGACTG--CACGGCGGCA 10158632
Query 518489 TCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATT 518548
|||| || | | |||||| || || || || || || || || | ||| || || ||
Sbjct 10158633 TCATCGAACTTGCGACCAATCAAGCGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATC 10158692
Query 518549 GCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATAT 518608
|| | || | ||||| |||||||| |||||| | || || || || || | ||||||
Sbjct 10158693 GCCACCTGGTTCTTGGCGGCATCTCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAG 10158752
Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCAT 518668
|||||||| || |||||||| || || || || || || || || || |||| || |
Sbjct 10158753 GATGGAGTGGTACGATTACCCTGGTCGTTGGCGATGATCTCGACCTTGCCATGCTGGAAC 10158812
Query 518669 ACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713
|| || || || | || || || ||||||||||||| ||||
Sbjct 10158813 ACGCCCACGCACGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 10158857
>seq4
Length=24153973
Score = 96.9 bits (106), Expect = 3e-14
Identities = 269/413 (65%), Gaps = 0/413 (0%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|| |||||||| || || ||||||||||| | ||||| || || || | || || ||
Sbjct 13641493 GCCGTCACATTGAGTATTCCATTGGCATCGATGTCAAAGGTCACCTCCACCTGGGGCACT 13641434
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | |||| ||||| || | | | ||| | ||||| | || |||||
Sbjct 13641433 CCGCGTGGAGCCGGTGGAATTGCCGAGAGTTCAAACTTACCCAGGCTGTTGTTATCCCGC 13641374
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438
|| | || ||||||||||| | |||||| || | | || || || | ||||
Sbjct 13641373 GTCATCGCCCGCTCACCCTCGAACACCTGGATAAGCACACCTGGCTGGTTGTCCGCATAA 13641314
Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498
|| ||||| | | | || || || || || ||||| || | ||| | |||||
Sbjct 13641313 GTGGTAAAGATTTGCGTTTGCTTGGTGGGTATGGTGGTGTTCCTCTTAATCAGTGTGGTC 13641254
Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558
|| | ||||| || || || | ||| ||||| |||||||||||||| | |||| | |
Sbjct 13641253 ATCACTCCACCAGCGGTCTCAATACCCAGAGACAGAGGAGTGACATCCAGCAGGAGCAGA 13641194
Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618
| || | | || || | ||| || || || || || | |||||||||||
Sbjct 13641193 TCCTGCACTGCCTCCGATGTATCGCCATGGAGGATGGCAGCCTGCACTGCAGCACCATAG 13641134
Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAA 517671
|| || || ||||| ||||||| | | ||||| | || || ||||| ||
Sbjct 13641133 GCCACCGCCTCATCGGGATTAATGGACTTGTTTAGATCCTTGCCGTTGAAGAA 13641081
>seq9
Length=20829647
Score = 89.7 bits (98), Expect = 4e-12
Identities = 202/300 (67%), Gaps = 4/300 (1%)
Strand=Plus/Plus
Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079
||| | ||| || || ||||||||||| | ||||| || || || || | |||
Sbjct 11066182 ACGCTGATCGAAGTCCTCACCTCCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 11066241
Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139
| ||| | || | | || || | ||||| ||| || || |||| ||| || |
Sbjct 11066242 CACTCCGTTATCGATGGTCAGCAGGGAGACATCGAAGGTGCCGCCGCCCAAATCGAACAC 11066301
Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199
||| || ||| ||| | | | | || || || ||||| || |||| ||| ||||||||
Sbjct 11066302 AAGCACGTTC--TTC-TCGCCCTCCTTCTTGTCCAGACCGTAGGCAATAGCCGCAGCAGT 11066358
Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259
||||| || || || | || || | ||||| ||||| || ||||| || |||||
Sbjct 11066359 GGGTTCGTTGATGATGCGCATCACCTGCAGACCGGCAATCACACCAGCATCCTTGGTGGC 11066418
Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318
|| | || | |||||| || || || || || |||| ||||||| || | ||||||
Sbjct 11066419 CTGACGCTGGGCATCGTTGAAGTAGGCTGGCACGGTAACGACGGCATGGGTGACCTTCTT 11066478
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780444320123014
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |