Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 1e-15 seq1 98.7 1e-15 >seq2 Length=21544594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 290/442 (66%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || |||| ||||| || ||||| ||||||||| || |||| | | Sbjct 8575474 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 8575415 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| ||| Sbjct 8575414 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 8575355 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 102358 ||||| |||||||| | ||| || ||||| ||| | || || | | | | Sbjct 8575354 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAGCACCTGGTGCAG 8575295 Query 102359 TAAACCAACGACTGAGACTATTCAT-TCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417 | |||| | ||| | |||| || | || || || | |||||| ||| Sbjct 8575294 CGACCCAA-GCGCGAG-CGCATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGG 8575237 Query 102418 GATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCG 102477 ||| | |||||||| || | | | ||||| ||||| | || ||||||| Sbjct 8575236 AGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTGCGACCTGATGTCCC 8575177 Query 102478 AATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGA 102537 | || ||||||| ||| | || | ||| | | || | || || || | | Sbjct 8575176 AGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACA 8575117 Query 102538 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 102597 || |||| || |||||| |||||||||||| || || || || ||||| ||||| | Sbjct 8575116 ACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTT 8575057 Query 102598 TCGAAAAGAGGGTTGGGGACTA 102619 ||||||||| ||| | ||| || Sbjct 8575056 TCGAAAAGAAGGTGGCGGAGTA 8575035 >seq1 Length=23539531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 ||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || || Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 ||| | ||||| | | | |||| || || || || || || || || || || | Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || | |||| || || || | | | ||| ||||| |||| |||| Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| |||| | | |||||| | | |||||||||| || || ||||| | |||| Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855 Query 176259 CCGCCA 176264 || ||| Sbjct 18945856 CCACCA 18945861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620683282045680