Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 1e-15
seq1 98.7 1e-15
>seq2
Length=21544594
Score = 98.7 bits (108), Expect = 1e-15
Identities = 290/442 (66%), Gaps = 4/442 (1%)
Strand=Plus/Minus
Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239
||||| || |||| ||||| || ||||| ||||||||| || |||| | |
Sbjct 8575474 GAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 8575415
Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299
|||| ||||| |||||||| ||||| ||||| || | ||||||||||||||| |||
Sbjct 8575414 ATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGATTGACCTTCTCCAACGAGCTGATC 8575355
Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG-GAACTTTTCAAATTATTGCGTAT 102358
||||| |||||||| | ||| || ||||| ||| | || || | | | |
Sbjct 8575354 TCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCAGCACCTGGTGCAG 8575295
Query 102359 TAAACCAACGACTGAGACTATTCAT-TCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGG 102417
| |||| | ||| | |||| || | || || || | |||||| |||
Sbjct 8575294 CGACCCAA-GCGCGAG-CGCATCATCGAGATCATCCGCGACGCGGTGGCCATTGAGCAGG 8575237
Query 102418 GATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCG 102477
||| | |||||||| || | | | ||||| ||||| | || |||||||
Sbjct 8575236 AGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGCATGAACTGCGACCTGATGTCCC 8575177
Query 102478 AATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGA 102537
| || ||||||| ||| | || | ||| | | || | || || || | |
Sbjct 8575176 AGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTACA 8575117
Query 102538 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 102597
|| |||| || |||||| |||||||||||| || || || || ||||| ||||| |
Sbjct 8575116 ACACCAAAAACCCATTTAACTTCATGGAGATGATATCGCTGGATGGAAAGACCAACTTTT 8575057
Query 102598 TCGAAAAGAGGGTTGGGGACTA 102619
||||||||| ||| | ||| ||
Sbjct 8575056 TCGAAAAGAAGGTGGCGGAGTA 8575035
>seq1
Length=23539531
Score = 98.7 bits (108), Expect = 1e-15
Identities = 171/246 (70%), Gaps = 2/246 (1%)
Strand=Plus/Plus
Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079
||| || || ||| | | || |||||||| ||||| | |||||||| ||||| || ||
Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676
Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138
||| | ||||| | | | |||| || || || || || || || || || || |
Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198
|||||||||| || | |||| || || || | | | ||| ||||| |||| ||||
Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795
Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258
|||| |||| | | |||||| | | |||||||||| || || ||||| | ||||
Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855
Query 176259 CCGCCA 176264
|| |||
Sbjct 18945856 CCACCA 18945861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620683282045680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |