Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=23539531 Score = 138 bits (152), Expect = 1e-27 Identities = 929/1475 (63%), Gaps = 58/1475 (4%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| ||||| ||||| || ||||| ||||| || ||||| | ||| | || || Sbjct 10003432 CTTGGTGCGCAGATAGTACATTCCGGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTAT 10003491 Query 109461 TGAAGAGAG-TTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGA 109518 |||| || ||| | ||| | | ||| ||| | | ||| | ||||||| |||| Sbjct 10003492 GGAAGTCAGCTTTCCATAGTTTGG--CTCGGCCACATGTATGTTGAACGACTGACTCTGA 10003549 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA--TTTCCC 109576 || ||||| ||||||||| || ||||| | || | |||| | || | |||||| Sbjct 10003550 TCTATGAACGCACCACGATCGGCGGCCATTTTAATCGTGGACTT--GACTGAGATTTCCC 10003607 Query 109577 AGACAGTCTTGTACAAATTCTTG-ATATCATCGGGAATGTCCACGATGTTTTGAATAGAG 109635 | || |||||||||| || || | | | | ||| ||| | | ||||||||||| || Sbjct 10003608 ACACCGTCTTGTACAGAT-CTCGCACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGAT 10003666 Query 109636 CCACCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTG 109692 || || || || |||| | | |||||| || | ||| | | | | | Sbjct 10003667 CC-CCTGC--TCGATATGATCTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTT 10003723 Query 109693 AGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAG 109751 || ||| |||||| ||| | ||||||||| ||||| || | || || ||| Sbjct 10003724 AGGTCGCGCAACAA-ATGATGGTTGACCACCTGGAATTCGCCGGACAGAACTCGCCGGGT 10003782 Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 ||| ||||| || ||||| || ||||| | ||||||||||| | || || || || || Sbjct 10003783 GTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGA 10003842 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTC 109871 || |||||||||||||| | ||| || ||| |||| ||| | | |||| | ||| Sbjct 10003843 TGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTC 10003902 Query 109872 ACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC--ATCCCACATATCT 109929 || | | ||| || |||| | || | |||| |||||||| || Sbjct 10003903 CTTCAATTTCTGCCAGTC-------CCAC-AGGTTCGTTGGCACCTTGTCCCACATGTCG 10003954 Query 109930 GGTTGAAGTACACC----CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTC 109985 || | | || |||| | || |||| | | | ||||| | || || Sbjct 10003955 TACTGCAAAATTCCTTTGCTCA----CCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTC 10004010 Query 109986 AACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG 110045 || ||||| ||| | || || | || ||| || || || ||||| || || Sbjct 10004011 GGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTG 10004070 Query 110046 AGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATC 110105 ||||| ||| | | ||||| | ||| | || | || ||||| || |||| Sbjct 10004071 CTGATTCAAGAGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATC 10004130 Query 110106 CGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGT 110165 || | ||||||| ||| | || | ||| |||||| ||| || || | || Sbjct 10004131 AGCGAATCCCTGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCCTC 10004190 Query 110166 TTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGT 110225 | | || ||| | ||| || || | | || ||||| || || || |||| || Sbjct 10004191 TGGCAGCGGATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGT 10004250 Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 || ||| | ||| || | | |||| ||| || ||||| |||| | || ||| Sbjct 10004251 GACTTCCTTGAGCTTCTTGAAATCATACG---TCTTCTCCGGCGTGACGAACATGTTGAG 10004307 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 || || || || | ||||| || | | |||| || || ||||| | ||||| Sbjct 10004308 GGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTC 10004367 Query 110346 CGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCA 110405 ||| ||||||||| | ||||||| || | |||| ||| || || |||||| Sbjct 10004368 CGTGCACAAGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCA 10004427 Query 110406 TGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTT 110465 || ||||| |||||||||| || | || || ||| || | || | ||||| Sbjct 10004428 AGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAA 10004487 Query 110466 CCATA--CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTG 110523 ||| | || | || || ||| ||| || |||| || | |||||| || | Sbjct 10004488 CCACAGGGATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCG 10004545 Query 110524 TACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAG 110583 |||| | || ||||| | || |||| || ||||| ||||| ||| || Sbjct 10004546 TACAGCTTTTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCAC 10004605 Query 110584 AAGAGGGACCAATTTCCACCCT---CCTCAACCCTCTTCATGAACAGGTCAGGAATCCAC 110640 | ||| ||||||| |||| | |||| || | |||||||| || || || |||||| Sbjct 10004606 ATGAGCGACCAAT---CACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCAC 10004662 Query 110641 ATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCC 110700 | || | || || || || ||| |||||| | || ||| || ||| Sbjct 10004663 AGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTTCTTCTTCAGTTCC 10004722 Query 110701 AAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------C 110754 | || || | || |||||||||||| ||||| ||||| | || | || || | Sbjct 10004723 AGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAAATGGCAAAGGCACCGGGGCGC 10004782 Query 110755 TTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || | || || |||| | ||||| || || ||| |||||||| ||||| ||| Sbjct 10004783 TT--GCCG-CCTCCCTGATCCACATAACGAGCCACATTATTAAAGACCCTCAGCATGGGA 10004839 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAAT 110849 | | |||| ||| ||||||||| || | ||| Sbjct 10004840 ACCAACCCATTGGAAGTACCATTTGTGCCGCAAAT 10004874 Score = 127 bits (140), Expect = 2e-24 Identities = 188/264 (71%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||| ||||| ||| | | ||| |||||||||||||| | |||||| || ||||| ||||| Sbjct 18945617 ATCTTTGCCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTTATGTT 18945676 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGT-TTCAGCGAGGGAAACTTCGC 167656 |||| ||| | ||| | ||||| || ||||| || || || ||||| || || | Sbjct 18945677 GTTCGCACCCACAAAATTCTGGGCCAGATTTACGATTGTCATCTGC-AGGGATACCTCTC 18945735 Query 167657 CGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCAT 167716 |||||||||| || | | || ||||| || | | | ||| || ||||||| |||| Sbjct 18945736 CGTGGTGGTAGGCCGACATCTCCGCCACTGATCCGGATAGCTGGGCCACCTTCACCTCAC 18945795 Query 167717 CTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACCAT 167776 ||| |||| ||| |||||| | |||||||||| || ||| || || | |||| Sbjct 18945796 GCTTGTCATTCCTTTTGAAACAAGTGAACATAACCTTCCGCTGACCCGGCTTCAAGCCAT 18945855 Query 167777 CTGCCACGTGAGCAATTGAGCGCT 167800 | ||| || ||| ||||||| Sbjct 18945856 CCACCAGACTAGGAATGGAGCGCT 18945879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588919907398200