Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 >seq1 Length=23539531 Score = 181 bits (200), Expect = 1e-40 Identities = 640/988 (65%), Gaps = 19/988 (2%) Strand=Plus/Plus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || |||||||| ||||| || || ||| ||||||| || |||| || || || || || Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || || | | || ||| || | ||| | | ||| ||| ||| Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGA 106111 || | | |||||| | || || ||| |||||| ||||||| || | || Sbjct 10003904 TTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGC 10003960 Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171 | | |||| | | || ||||| | || || || | ||||| || | ||| Sbjct 10003961 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCC 10004020 Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231 | ||| ||||| || |||| || | | || || |||||||| || | ||||| Sbjct 10004021 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAG 10004080 Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291 |||||| || || | | | | || | ||| || |||| |||| || Sbjct 10004081 AGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCC 10004140 Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGG 106349 |||| ||| | || | || | || | || ||| ||||| | || ||| || ||| Sbjct 10004141 TGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCGG 10004199 Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409 |||| |||| | ||||| | |||||||||||||||||| |||||||||| ||| | Sbjct 10004200 -ATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCT 10004258 Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 106469 || || | ||||| | || |||| |||| || | |||||||| | Sbjct 10004259 TGAGCTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGG 10004315 Query 106470 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACA 106529 | ||||| ||||| || || |||||||| | || || | ||||| || |||| Sbjct 10004316 AGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACA 10004375 Query 106530 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589 ||||| | |||||| || || | ||||| ||||| ||||| ||||||| || |||| Sbjct 10004376 AGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 10004435 Query 106590 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA--C 106647 || |||||||||| || | || |||||| || | || | || || ||||| Sbjct 10004436 TGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGG 10004495 Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707 || | || || | ||||||||| ||||| |||||| || ||| || Sbjct 10004496 ATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTT 10004553 Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767 ||| || || || ||| | | ||| ||||||||| ||||| || || | || || Sbjct 10004554 TTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGA 10004613 Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827 ||| | ||| |||| || || |||||||| || || || |||||||||| |||| Sbjct 10004614 CCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAA 10004673 Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCA 106886 ||||| | ||| |||||| | || ||| || | | || |||||||| | Sbjct 10004674 CAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAA 10004732 Query 106887 TGATATCCGCGTGCCATGGCTCAAGATA 106914 || ||||| |||||| || || ||||| Sbjct 10004733 AGACATCCGAGTGCCAGGGTTCCAGATA 10004760 Score = 100 bits (110), Expect = 3e-16 Identities = 200/291 (69%), Gaps = 4/291 (1%) Strand=Plus/Plus Query 168444 GTGAAAATGTACCTCGT-CTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTG 168502 ||||||||||| | | ||| | | ||| || || ||| | | || ||||||||||| Sbjct 18945591 GTGAAAATGTAACGAGCGCTG-GCACAATCTTTGCCTCCCGTCAAGCGGGTACCAAATTG 18945649 Query 168503 ACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAAC 168562 ||| | || ||||| || || |||||||| | |||| | | | |||| || || Sbjct 18945650 ACCGCGTGGCTCAAGCAGATTTATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTAC 18945709 Query 168563 AATCGT-GTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATG 168621 || || || || | |||||| || || |||||||| || ||| | ||||| || || Sbjct 18945710 GATTGTCATCTGC-AGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 18945768 Query 168622 CCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCA 168681 | | || || |||||||||| ||| |||| |||| | | ||| |||| |||| | Sbjct 18945769 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCATTCCTTTTGAAACAAGTGAACATAA 18945828 Query 168682 CTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGCGCT 168732 | |||| ||| ||||| | |||||| ||| | | ||| ||||||| Sbjct 18945829 CCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 18945879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589924611703560