Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 181 1e-40
>seq1
Length=23539531
Score = 181 bits (200), Expect = 1e-40
Identities = 640/988 (65%), Gaps = 19/988 (2%)
Strand=Plus/Plus
Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994
|| |||||||| ||||| || || ||| ||||||| || |||| || || || || ||
Sbjct 10003784 TATATGTTCGTGGTGTACGGCTCGAAGGATTCATTGTTGCCCATTATCTGAGCTGTAGAT 10003843
Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054
|| || ||||| || || | | || ||| || | ||| | | ||| ||| |||
Sbjct 10003844 GCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGGACACCGTGCTTCTTAATGGACTCC 10003903
Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATTGA 106111
|| | | |||||| | || || ||| |||||| ||||||| || | ||
Sbjct 10003904 TTCAATTTCTGCCAGTCCCAC---AGGTTCGTTGGCACCTTGTCCCACATGTCGTACTGC 10003960
Query 106112 AGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCC 106171
| | |||| | | || ||||| | || || || | ||||| || | |||
Sbjct 10003961 AAAATTCCTTTGCTCACCGGGCTGCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCC 10004020
Query 106172 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 106231
| ||| ||||| || |||| || | | || || |||||||| || | |||||
Sbjct 10004021 AGTTCGCAGCTGGCTTCCAAGGCGCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAG 10004080
Query 106232 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 106291
|||||| || || | | | | || | ||| || |||| |||| ||
Sbjct 10004081 AGACCGGCTTCTTCGCTTTCGTACGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCC 10004140
Query 106292 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT--CAACGG 106349
|||| ||| | || | || | || | || ||| ||||| | || ||| || |||
Sbjct 10004141 TGAATACCAATGCCCACGGGACGATGCCTCAAATTGGACTTCCTTGCC-TCTGGCAGCGG 10004199
Query 106350 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 106409
|||| |||| | ||||| | |||||||||||||||||| |||||||||| ||| |
Sbjct 10004200 -ATAATAATTGATATCAATTATCTTGTTTAGATTTTTGGTAACTATCTTTGTGACTTCCT 10004258
Query 106410 GAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTG 106469
|| || | ||||| | || |||| |||| || | |||||||| |
Sbjct 10004259 TGAGCTTCTTGAAATCATACGT---CTTCTCCGGCGTGACGAACATGTTGAGGGCGATGG 10004315
Query 106470 ATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACA 106529
| ||||| ||||| || || |||||||| | || || | ||||| || ||||
Sbjct 10004316 AGGCCAAGTTGCAGACTGCAATCTCATCCGGTGAGGAATATTCAACGATTTCCGTGCACA 10004375
Query 106530 AGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCT 106589
||||| | |||||| || || | ||||| ||||| ||||| ||||||| || ||||
Sbjct 10004376 AGTTGCTGCACTTAATGGTGCCTACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCT 10004435
Query 106590 TGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA--C 106647
|| |||||||||| || | || |||||| || | || | || || |||||
Sbjct 10004436 TGAAGAGCATGTACGGATTTCCGGTCTCCACTTGCGCCTCAATGATGGCAAACCACAGGG 10004495
Query 106648 ATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGC 106707
|| | || || | ||||||||| ||||| |||||| || ||| ||
Sbjct 10004496 ATTG--AGCCTTAACCGTTCGGTTGGCCCGACCCTCTTGCTCGTATTTCTCGTACAGCTT 10004553
Query 106708 TTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGA 106767
||| || || || ||| | | ||| ||||||||| ||||| || || | || ||
Sbjct 10004554 TTCGAATTCATCGCCCCACACTTCGTGGAGACCTGGACACTTGTGGGGGCACATGAGCGA 10004613
Query 106768 CCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAA 106827
||| | ||| |||| || || |||||||| || || || |||||||||| ||||
Sbjct 10004614 CCAATCACCGTTGGCCTCCACGCGTTTCATGAAGAGATCGGGTATCCACAGGGCGTAAAA 10004673
Query 106828 GAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCA 106886
||||| | ||| |||||| | || ||| || | | || |||||||| |
Sbjct 10004674 CAGATCGCGTGCGCGATTCTCTTCTTTGCCCGTGTT-CTTCTTCAGTTCCAGGAACTCAA 10004732
Query 106887 TGATATCCGCGTGCCATGGCTCAAGATA 106914
|| ||||| |||||| || || |||||
Sbjct 10004733 AGACATCCGAGTGCCAGGGTTCCAGATA 10004760
Score = 100 bits (110), Expect = 3e-16
Identities = 200/291 (69%), Gaps = 4/291 (1%)
Strand=Plus/Plus
Query 168444 GTGAAAATGTACCTCGT-CTGAGAAGCATCCTTACCACCCATGAGACGCGTACCAAATTG 168502
||||||||||| | | ||| | | ||| || || ||| | | || |||||||||||
Sbjct 18945591 GTGAAAATGTAACGAGCGCTG-GCACAATCTTTGCCTCCCGTCAAGCGGGTACCAAATTG 18945649
Query 168503 ACCACACGGTTCAAGAAGGTTAATGTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAAC 168562
||| | || ||||| || || |||||||| | |||| | | | |||| || ||
Sbjct 18945650 ACCGCGTGGCTCAAGCAGATTTATGTTGTTCGCACCCACAAAATTCTGGGCCAGATTTAC 18945709
Query 168563 AATCGT-GTCCGCTAAGGATACTTCACCATGGTGGTACGCAGACTTGTCCGCGACATATG 168621
|| || || || | |||||| || || |||||||| || ||| | ||||| || ||
Sbjct 18945710 GATTGTCATCTGC-AGGGATACCTCTCCGTGGTGGTAGGCCGACATCTCCGCCACTGATC 18945768
Query 168622 CCGCCAGTTGTGCCACCTTCATTTCATCCTTGAGATTCTTATGGAAGCAAGCATACATCA 168681
| | || || |||||||||| ||| |||| |||| | | ||| |||| |||| |
Sbjct 18945769 CGGATAGCTGGGCCACCTTCACCTCACGCTTGTCATTCCTTTTGAAACAAGTGAACATAA 18945828
Query 168682 CTTTCCTCTGTGAAGGCTTGAGACCATCCGCCATATGGGCAATAGAGCGCT 168732
| |||| ||| ||||| | |||||| ||| | | ||| |||||||
Sbjct 18945829 CCTTCCGCTGACCCGGCTTCAAGCCATCCACCAGACTAGGAATGGAGCGCT 18945879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589924611703560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |