Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 >seq5 Length=27160941 Score = 91.5 bits (100), Expect = 2e-13 Identities = 167/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 159539 TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC 159598 |||||||| | |||||||| |||||||| ||| || || || || |||| | | Sbjct 14981459 TGTCATGTCTAATGATTACCTATCCATCGACAATGGGCGTGTTCGAGG-AAACGGTTGCC 14981401 Query 159599 -AGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | || || | | | || || |||| || ||||| || | ||||| || || | Sbjct 14981400 GATATTTGCACCCTGATCCACAAGCATGGCGGACAGGTGTACTTGGATGGAGCCAACATG 14981341 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 ||||| ||||| || || ||| | || ||||| ||||| | |||||| ||| Sbjct 14981340 AATGCCCAGGTTGGACTGTGTCGACCTGGAGATTATGGCAGCGATGTTTCTCATCTCAAC 14981281 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 | || ||||| ||||| ||||| ||||||||||| |||||||| | ||||| || || Sbjct 14981280 CTGCACAAGACCTTCTGCATTCCGCATGGAGGTGGTGGTCCTGGAATGGGTCCCATCGGC 14981221 Query 159778 GT 159779 || Sbjct 14981220 GT 14981219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587995195473840