Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq671 145 2e-29
seq1 134 3e-26
seq3570 120 7e-22
seq9 116 8e-21
seq4 116 8e-21
>seq671
Length=216
Score = 145 bits (160), Expect = 2e-29
Identities = 145/188 (77%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || ||||| || || || ||||| || | |||||| | ||||| ||
Sbjct 29 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTC 88
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
||||||||| || |||||||| || || || || ||||||||||| || || ||||||||
Sbjct 89 GAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCTTG 148
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
|| || ||| || |||||||||||||| || || ||||| ||||| | |||||
Sbjct 149 GATCTTAGCCTTCACATTCTCAATGGTGTCTGATGGCTCAACTTCCAGGGTGATGGTCTT 208
Query 195111 TCCTGTCA 195118
||| ||||
Sbjct 209 TCCGGTCA 216
>seq1
Length=23539531
Score = 134 bits (148), Expect = 3e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| ||||||||||| || ||||| || || || | || || | |||||||| |||||
Sbjct 10088919 GTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 10088860
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| ||
Sbjct 10088859 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 10088800
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||||| || || || || ||||| ||| || ||||| || | ||||| || ||
Sbjct 10088799 GGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 10088740
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| || || ||||| | |||||
Sbjct 10088739 GAGGGTCTTAACGAAGATCTGCAT 10088716
>seq3570
Length=216
Score = 120 bits (132), Expect = 7e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || || || ||||| |||| ||||| | || || || |||||
Sbjct 210 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 151
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||| || || || || ||||| || || ||
Sbjct 150 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 91
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||||||||||||| || || || || || | ||| | ||||| || ||
Sbjct 90 GGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCAGT 31
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| ||| || ||||| | |||||
Sbjct 30 CAGAGTCTTCACGAAGATCTGCAT 7
>seq9
Length=20829647
Score = 116 bits (128), Expect = 8e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || || || ||||| |||| ||||| | || || || |||||
Sbjct 5792492 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 5792551
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || ||||| || | || || || ||||| || || || || ||||| || || ||
Sbjct 5792552 CTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 5792611
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| ||||||||||| || || || || || | ||| | ||||| || ||
Sbjct 5792612 GGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTGCCGGT 5792671
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| ||| || ||||| | ||||||
Sbjct 5792672 CAGAGTCTTAACGAAAATTTGCAT 5792695
Score = 111 bits (122), Expect = 3e-19
Identities = 147/204 (72%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || || || ||||| |||| ||||| | || || || |||||
Sbjct 5792264 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCCAGCTG 5792323
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| | || || || ||||| || || || || ||||| || || ||
Sbjct 5792324 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 5792383
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||||||||| ||||| || || || || || | || | ||||| || ||
Sbjct 5792384 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGT 5792443
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|| ||| || ||||| | |||||
Sbjct 5792444 CAGAGTCTTCACGAAGATCTGCAT 5792467
>seq4
Length=24153973
Score = 116 bits (128), Expect = 8e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| || ||||| || || || |||||||||| || || | || ||||| || ||
Sbjct 3789624 GTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCCAGTTG 3789683
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || || || || ||||| || || || || || || ||||| ||
Sbjct 3789684 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGAATCTT 3789743
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || ||||||||||||||||| || || || | || | ||||| || ||
Sbjct 3789744 GGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTGCCAGT 3789803
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| | |||||
Sbjct 3789804 GAGAGTCTTCACGAAGATCTGCAT 3789827
Score = 102 bits (112), Expect = 2e-16
Identities = 157/228 (69%), Gaps = 16/228 (7%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || ||||| || || || |||||||||| || || | || |||||
Sbjct 3789846 AACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3789905
Query 194991 GAGCTGCTTACCTG----------------CGAAGATAAGTCGTTGTTGGTCTGGAGGAA 195034
|| ||||| || | ||||||| || || || || ||||| ||||
Sbjct 3789906 CAGTTGCTTGCCGGTGGATGAGGCTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAA 3789965
Query 195035 TGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTT 195094
| || || || || ||||| || ||| || |||||||||||||| || || || |
Sbjct 3789966 TTCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCT 3790025
Query 195095 CAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
| ||||| | |||||||| ||||| || || || || | |||||||
Sbjct 3790026 CGAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATTT 3790073
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109373294139773
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |