Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq9 107 1e-18
seq1 107 1e-18
seq3570 102 5e-17
seq4 98.7 6e-16
>seq9
Length=20829647
Score = 107 bits (118), Expect = 1e-18
Identities = 152/214 (71%), Gaps = 10/214 (5%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| || || | ||| | || |||
Sbjct 5792259 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792318
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || | || ||||| ||| | || | |||||||||||
Sbjct 5792319 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792378
Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
||||| |||||| |||| ||||| | | |||||| || | || ||||
Sbjct 5792379 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAAGTGATGG 5792433
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || ||||||||||| |||||||||||
Sbjct 5792434 TCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 5792467
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| || || | ||| | || |||
Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792546
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || | || ||||| ||| | || | |||||||||||
Sbjct 5792547 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792606
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | || | ||| || || | ||| ||||| |
Sbjct 5792607 ATCTTGGCCTTGAC--ATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCT 5792664
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
| || || |||||||| || || || ||||||||
Sbjct 5792665 TGCCGGTCAGAGTCTTAACGAAAATTTGCATATT 5792698
>seq1
Length=23539531
Score = 107 bits (118), Expect = 1e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||| || ||||||||||||||||| || ||| | || |||| |||
Sbjct 10088924 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 10088865
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || || || || || || || ||||| ||| | || | || || ||||| |
Sbjct 10088864 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 10088805
Query 34893 ATCTTCTGTTTGACGGATGCTATCG-ATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951
||||| |||||| | | || | || | ||| || || || | || ||||| ||
Sbjct 10088804 ATCTTGGCTTTGACATTTTCGATAGTATCCGACGG-TTCGACCTCAAGAGTGATGGTCTT 10088746
Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|||||||| ||||| || ||||||||||| ||
Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 10088713
Score = 93.3 bits (102), Expect = 3e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | || || ||||| ||||| ||||| || || | || |||| |||
Sbjct 4075124 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4075065
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || ||||| || || || || ||||| ||| | || | |||||||| ||
Sbjct 4075064 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4075005
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | ||| | ||| || || | ||| ||||| |
Sbjct 4075004 ATCTTAGCCTTGAC--ATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCT 4074947
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || ||||| || ||||| ||||||||||||
Sbjct 4074946 TGCCGGTGAGGGTTTTCACGAAGATCTGCATA 4074915
>seq3570
Length=216
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| ||||| || || | ||| | || |||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| |||||||| || || | || ||||| ||| | || | |||||||||||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | || | ||| || || | ||| ||||| ||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || ||||||||||| |||||||||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCAT 7
>seq4
Length=24153973
Score = 98.7 bits (108), Expect = 6e-16
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| || || || ||| | ||| | || |||
Sbjct 3789619 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789678
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || ||||| || || || || ||||| ||| | || | |||||||| || |
Sbjct 3789679 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3789738
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| || || || || || | || | |||||| || | || ||||| |
Sbjct 3789739 ATCTTGGCCTTCAC--ATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCT 3789796
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || |||||||||||||| ||||||||||||
Sbjct 3789797 TGCCAGTGAGAGTCTTCACGAAGATCTGCATA 3789828
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324603455639832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |