Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 120 3e-22
>seq2
Length=21544594
Score = 120 bits (132), Expect = 3e-22
Identities = 533/836 (64%), Gaps = 6/836 (1%)
Strand=Plus/Plus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
|||||||| || || || || || | ||||| || || || || ||||| || |
Sbjct 8575020 ACTCCCATGCGCTGGTACTCCGCCACCTTCTTTTCGAAAAAGTTGGTCTTTCCATCCAGC 8575079
Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779
||||| ||| ||||| || | |||||| ||||| || || || ||| | || ||
Sbjct 8575080 GATAT-CATCTCCATGAAGTTAAATGGGTTTTTGGTGTTGTAGATCTTTCCAACGCCCAA 8575138
Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839
|| | || | | |||||||| || | ||| || | ||||| || || |||||
Sbjct 8575139 CTCCACGAGCAAACGGTCCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAGTTCAT 8575198
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| || || || || || || ||||| || || || || || || || || || ||
Sbjct 8575199 GCCGATCAAATTGACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATGGCCACCGCGTC 8575258
Query 18900 TGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAA 18959
|| || | | | || || || | | | || || | |||||||
Sbjct 8575259 GCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAG 8575318
Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019
||||| || || || | |||||||| | | |||| || || || || || ||
Sbjct 8575319 CACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAA 8575378
Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079
||||||||||| || | || || | |||||| || || || || || |||||
Sbjct 8575379 TCCAGGCATCAGACCGCGCTTCTTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAA 8575438
Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139
|| || || || || ||||| || | | | || || || |||| | | | |
Sbjct 8575439 GATGCCCTCCACGGCGGCAAAGGCGATGATGCGCTCCCCGAAATTAGC-CGACTTGGACG 8575497
Query 19140 A-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198
| ||||| ||| ||||| || ||||| || ||| ||||| || || |||| |
Sbjct 8575498 AGATCCAGGACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGT 8575557
Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258
| || || ||| |||| | || ||| | || | || ||||| | ||||||||
Sbjct 8575558 TGAACAGGTACTCTCGCTGGTGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACA 8575617
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318
| || || || | || || || || ||||| || ||||| || |||| ||| || || |
Sbjct 8575618 TCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGA 8575677
Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
|||| || || || |||| || |||| || || || || || |||||| || |
Sbjct 8575678 TCTGCACCTCCTGACTGAATCGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGG 8575737
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATG-TATTCCAA 19437
|||| || || | || || || ||||| || || | || | | | |||
Sbjct 8575738 CAAAGAAGGCCAGCACGTGCGAGATGAAATGGCGCTCGTC-GTCCTTCAGGCGGTGCCAG 8575796
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493
||| ||| || || || ||||| || || || || ||||| ||||||||||| ||
Sbjct 8575797 TCAGTAAGGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAAGCCTCAGC 8575852
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562055266163160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |