Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1 268 8e-67
>seq1
Length=23539531
Score = 268 bits (296), Expect = 8e-67
Identities = 462/669 (69%), Gaps = 8/669 (1%)
Strand=Plus/Plus
Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784
||||| || | || || |||| | || || |||| |||||||||||| ||
Sbjct 2846001 AAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTG 2846060
Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844
| ||| || || ||||||||| || ||||| | ||||||||||| | || |||| |
Sbjct 2846061 CGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCATG 2846120
Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904
||||| ||||| || ||||| | || || || || || || ||||||| ||||| ||
Sbjct 2846121 GTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGG 2846180
Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964
| |||| ||||||||| |||||||| || || |||||||| | ||||||||||||
Sbjct 2846181 GCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAGC 2846240
Query 29965 TGACACGAGAGCTCTCCG------TCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018
|| ||||| ||||| ||| ||| ||||||||||| || | |||||||||
Sbjct 2846241 TGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGC 2846300
Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078
|| || ||||| | ||| || ||||| || ||| ||||||||| | ||||
Sbjct 2846301 GGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCT 2846360
Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138
||||| ||||||||| ||| | | | ||||||| || | ||| | || |
Sbjct 2846361 GAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGCTG 2846420
Query 30139 TAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197
||||| | | || || | ||||| || |||||||||||||||||||| ||||||||
Sbjct 2846421 TAGTCATCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACAC 2846479
Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257
||| ||||| || || | | | | | ||| ||| ||||||||| || ||||||||
Sbjct 2846480 CGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGA 2846539
Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
| ||| | |||||||| | || |||| | ||| |||| | || ||
Sbjct 2846540 GCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTCTTGCC 2846599
Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377
|||||||||||||||||||| | || || | ||||| | ||| || || ||
Sbjct 2846600 CGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAG 2846659
Query 30378 GAGGGGAAA 30386
||||||||
Sbjct 2846660 CAGGGGAAA 2846668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408579657174287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |