Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 268 8e-67 >seq1 Length=23539531 Score = 268 bits (296), Expect = 8e-67 Identities = 462/669 (69%), Gaps = 8/669 (1%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || || |||| |||||||||||| || Sbjct 2846001 AAGTCCTCGATGTCCTGCACCTGACGTTTAATGATCAGCTTGGGAAAGGGTCGCGGTGTG 2846060 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| || || ||||||||| || ||||| | ||||||||||| | || |||| | Sbjct 2846061 CGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGTGTATCGCCCATG 2846120 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| || ||||| | || || || || || || ||||||| ||||| || Sbjct 2846121 GTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATGTGGGTGAGCAGG 2846180 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||| |||||||| || || |||||||| | |||||||||||| Sbjct 2846181 GCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTTCTCTGGTAGAGC 2846240 Query 29965 TGACACGAGAGCTCTCCG------TCGCTCACGTAAAACTGACACATGGTGTGGCACGGA 30018 || ||||| ||||| ||| ||| ||||||||||| || | ||||||||| Sbjct 2846241 TGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAGCAGTGGCACGGC 2846300 Query 30019 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 30078 || || ||||| | ||| || ||||| || ||| ||||||||| | |||| Sbjct 2846301 GGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATGATGCGTCGGTCT 2846360 Query 30079 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 30138 ||||| ||||||||| ||| | | | ||||||| || | ||| | || | Sbjct 2846361 GAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGATTCCCTTGCCGCTG 2846420 Query 30139 TAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACAC 30197 ||||| | | || || | ||||| || |||||||||||||||||||| |||||||| Sbjct 2846421 TAGTCATCGTCGCAGGTGC-CGTACTGCGCCCCGAAATGCCTCCACTGGAAGCCGTACAC 2846479 Query 30198 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 30257 ||| ||||| || || | | | | | ||| ||| ||||||||| || |||||||| Sbjct 2846480 CGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACCCCATCTTGTCCAGGAATTCTCTGGA 2846539 Query 30258 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | ||| | |||||||| | || |||| | ||| |||| | || || Sbjct 2846540 GCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCAGCTTGGCATCCGTCTTGCC 2846599 Query 30318 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 |||||||||||||||||||| | || || | ||||| | ||| || || || Sbjct 2846600 CGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGAAGACACGCTTCGTGGTCAG 2846659 Query 30378 GAGGGGAAA 30386 |||||||| Sbjct 2846660 CAGGGGAAA 2846668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408579657174287