Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq2 129 8e-25 >seq2 Length=21544594 Score = 129 bits (142), Expect = 8e-25 Identities = 193/271 (71%), Gaps = 5/271 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||| ||||| || | |||||||| || ||||| || ||| | ||| || ||| || Sbjct 20242953 CAGGTCCTCATCAGTGAAGCCCGTTCCAATCTTGCATATGCTCTGATACTCCTCGTTCTC 20242894 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 || | || ||||| || || || | ||||||||||| |||| | ||| || || Sbjct 20242893 GGTGTCATAGCAGGCAAGCAAAAATCCTCCGTAGGTTCCAGTTCGCCGGCCCTTGCCTTT 20242834 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || || ||||||| ||| || | ||||| || || || ||| || ||| Sbjct 20242833 GTAGCCGCCAATGACCACCAAATCGAGTGAGTCGCCTACA--TTGGATAGGTAGTCCTTC 20242776 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| |||||| | | ||||||||||||||||| ||||| || | | |||| Sbjct 20242775 TTCAATTTCAGCCAGTTGCGGGATCTCTTGGCAATCTCATAGGTGGCCTCCTCATCCAAA 20242716 Query 197260 GTCTTGATCATCAATCCCTCGCAATCTTCCT 197290 || |||| ||| | |||||||||| ||||| Sbjct 20242715 GTTTTGACCATGAGGCCCTCGCAAT-TTCCT 20242686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676665149964720